Version 2.16.1
Genome Detective Platform

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Analysis Results

Analysis of SRR3458562_Metagenome_example

Paired-end short reads
SRR3458562_Metagenome_example_1.fastq.gz (953.48 MB), SRR3458562_Metagenome_example_2.fastq.gz (996.6 MB)
Default Virus Analysis (metagenome)
2022-12-02 13:08:19 UTC
panviral2.43

Statistics

151
50 - 136
# Reads % of Reads
Input file 18111492 100.0%
After QC
 15498002 85.6%
After filtering
 6874446 38.0%
Mapped back to contigs 6710040 37.0%

Quality Control (QC) reports

Assignments
Strains with at least 50% NT similarity (assuming a 45% similarity for non-covered parts)

# Reads
Depth of Coverage
NT Identity
AA Identity
2149356
37891.8
79.2%
89.3%
Rotavirus A (11 segments out of 11)
hide segment info
1587768
9437.6
78.8%
84.8%
Rotavirus A (segment 4)
478129
22188.7
70.3%
74.5%
Rotavirus A (segment 5)
336717
23447.3
54.8%
38.8%
Rotavirus A (segment 3)
203956
8528.2
77.8%
84.8%
Rotavirus A (segment 1)
171572
5815.6
86.0%
97.2%
Rotavirus A (segment 2)
116495
4809.4
81.4%
95.1%
Rotavirus A (segment 6)
84309
6806.4
88.0%
97.5%
Rotavirus A (segment 9)
82946
8355.4
76.7%
86.2%
Rotavirus A (segment 7)
63051
6402.1
79.7%
81.5%
Rotavirus A (segment 10)
22821
3287.7
91.7%
92.6%
Rotavirus A (segment 8)
20728
2133.2
80.3%
86.2%
Rotavirus A (segment 11)
7044
1171.6
90.4%
91.1%
1232600
24812.6
99.3%
99.1%
729118
517.7
99.9%
99.9%
498422
388.3
99.9%
99.9%
169687
3512.0
98.8%
99.7%
123659
13.2
99.9%
99.5%
96411
5154.9
97.6%
97.6%
56712
231.5
93.3%
95.4%
18788
22.4
99.9%
99.0%
14789
22.2
99.9%
99.1%
3798
10.1
99.9%
99.6%
3526
1027.4
82.8%
84.8%
2375
9.7
99.9%
99.5%
1453
8.6
99.4%
98.9%
1258
7.3
99.9%
99.2%
1129
11.5
99.2%
99.1%
882
9.8
99.7%
98.5%
840
6.9
99.7%
98.8%
739
5.8
99.9%
99.2%
625
7.3
99.6%
99.0%
575
6.8
99.7%
98.8%
569
5.1
99.9%
98.9%
531
7.5
99.8%
98.9%
435
9.2
99.7%
99.2%
350
4.8
99.9%
98.7%
338
4.2
99.9%
98.7%
313
16.0
66.9%
71.4%
310
8.0
99.5%
98.9%
286
8.6
99.6%
98.8%
277
4.1
99.8%
98.7%
258
4.6
99.7%
98.6%
183
5.0
99.9%
98.3%
17
1.2
98.6%
95.8%
16
2.1
93.1%
90.6%
10
1.0
93.9%
91.2%
4
3.8
74.6%
85.4%

Discoveries
Strains with low NT identity and/or low genome coverage

# Reads
Depth of Coverage
NT Identity
AA Identity
1269
49.8
85.1%
78.8%
905
24.9
94.9%
95.6%
850
36.0
94.7%
95.7%
809
17.6
52.7%
45.8%
655
18.4
96.8%
95.0%
491
21.9
96.8%
98.3%
348
17.3
91.7%
91.3%
347
13.7
98.1%
99.0%
336
6.1
99.5%
98.7%
325
12.8
95.0%
91.3%
287
23.2
88.0%
88.3%
277
4.9
99.7%
99.5%
269
7.4
92.3%
91.0%
255
7.6
99.6%
98.6%
236
24.2
89.8%
90.9%
213
86.4
91.6%
92.9%
211
15.2
97.4%
97.7%
196
15.3
91.6%
91.3%
193
11.5
99.6%
98.6%
192
18.2
94.7%
90.6%
184
14.4
90.5%
87.9%
173
16.8
90.0%
95.1%
173
12.4
96.2%
96.6%
167
10.1
97.5%
97.5%
160
16.3
95.2%
94.8%
158
15.7
93.6%
93.8%
157
28.1
93.4%
89.1%
140
7.0
96.7%
96.2%
137
41.1
94.5%
0.0%
118
11.4
97.7%
97.3%
107
62.3
100.0%
100.0%
105
47.0
89.2%
87.3%
85
12.1
97.3%
97.8%
82
4.2
99.9%
98.1%
80
8.4
96.3%
97.0%
75
3.6
100.0%
98.5%
68
18.7
93.9%
90.3%
63
16.6
94.5%
98.5%
57
8.2
89.7%
91.3%
51
5.0
97.0%
97.3%
44
14.1
92.1%
90.2%
41
18.7
94.4%
91.7%
36
8.4
93.7%
90.3%
31
6.0
95.6%
95.0%
31
21.3
90.8%
86.8%
29
4.3
90.0%
92.2%
27
6.0
99.2%
98.2%
27
12.7
97.3%
93.3%
25
4.3
93.0%
80.0%
25
6.7
99.1%
95.8%
23
6.3
96.8%
97.7%
23
9.8
84.1%
83.0%
22
8.1
75.0%
84.8%
21
11.4
80.8%
83.7%
19
7.2
84.5%
86.2%
18
5.2
98.3%
97.0%
16
12.4
75.6%
81.8%
14
11.7
99.1%
94.7%
14
6.2
77.9%
84.6%
13
6.2
99.6%
97.6%
13
9.8
98.3%
97.4%
12
6.2
80.6%
94.1%
11
2.4
63.6%
54.6%
11
1.5
85.1%
79.7%
10
6.5
98.7%
96.2%
9
7.3
78.7%
86.7%
7
2.8
98.4%
95.5%
6
4.8
80.9%
89.2%
6
4.6
97.8%
97.9%
6
4.4
96.3%
97.8%
6
5.2
94.1%
97.6%
5
1.2
80.2%
83.6%
5
2.1
75.1%
79.6%
4
3.3
87.1%
87.1%
3
1.0
97.1%
93.3%
3
2.2
97.8%
97.5%
3
2.1
97.6%
92.9%
2
1.5
80.9%
76.1%
2
1.0
100.0%
100.0%
1
1.0
83.7%
77.8%
1
1.0
76.7%
95.5%
1
1.0
83.7%
93.1%
1
1.0
94.1%
89.7%
1
1.0
100.0%
100.0%
1
1.0
77.9%
84.4%

Download Assignment and Discovery table:

Download analysis files

unused reads file not available for download
unused contigs file not available for download