Genome Detective

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Analysis Results

Analysis of ERR138007_norovirus_amplicon_example

Technology

Paired-end short reads

Input Files

ERR138007_1.fastq.gz (19.5 MB), ERR138007_2.fastq.gz (21.23 MB)

Protocol

Default Virus Analysis (metagenome)

Submitted On

2022-12-05 14:26:58 UTC

Release Version

panviral2.43

Statistics

Original Read Length

130

Trimmed Read Length

50 - 115

	# Reads	% of Reads
Input file	505918	100.0%
After QC	469254	92.8%
After filtering	451640	89.3%
Mapped back to contigs	447981	88.5%

Quality Control (QC) reports

Before Preprocessing

After Preprocessing

Taxonomy chart Taxonomy tree

Include Discovery

Scaling

Assignments

Strains with at least 50% NT similarity (assuming a 45% similarity for non-covered parts)

Assignment

# Reads

Depth of Coverage

NT Identity

AA Identity

Genome Coverage

Genome Coverage image

Norovirus GII (subtype: GII.P4, New_Orleans_2009)

446489

6757.5

79.8%

85.0%

99.3%

Human immunodeficiency virus 1 (subtype: HIV-1 Subtype F (F1))

1490

19.1

86.8%

82.5%

96.6%

Discoveries

Strains with low NT identity and/or low genome coverage

Similar to

# Reads

Depth of Coverage

NT Identity

AA Identity

Genome Coverage

Genome Coverage image

Simian immunodeficiency virus (subtype: unassigned)

1.7

78.1%

84.4%

1.4%

Download Assignment and Discovery table:

Download analysis files

Consensus Sequences

consensus sequences (assignment, discovery)

Consensus Contigs

consensus contigs (assignment, discovery)

Unused Reads

unused reads file not available for download

Unused Contigs

unused contigs file not available for download

Bam Files

BAM files