Version 2.16.1
Genome Detective Platform

NGS Details (ERR138007_norovirus_amplicon_example): Norovirus GII

Assembly

7464 (1 contig(s))
6757.5
446489
951486.83 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Norovirus GII (Taxonomy ID: 122929)
79.7895
85.002
3
3

Alignment

8941.0 (NT) + 15042.0 (AA) = 23983.0
74.6343
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT13747699.3%894160.1%7452 (99.1%)5989 (79.7%)54/12
Mutations:19T>G, 42C>T, 47A>G, 86A>G, 97T>C, 109A>T, 130A>G, 159T>A, 184C>T, 187C>T, 199C>T, 205G>T, 208C>T, 211T>C, 217T>C, 229G>A, 239C>A, 240C>T, 253C>T, 256C>T, 268C>T, 286G>C, 290A>T, 295T>C, 304G>A, 309G>A, 310T>A, 314A>T, 316C>T, 325G>C, 334T>C, 337C>T, 349A>G, 361G>A, 364C>T, 367C>T, 373G>A, 379A>T, 391C>T, 412G>A, 424C>T, 439A>G, 454T>A, 472G>A, 490C>T, 492A>G, 499A>G, 503A>G, 514T>C, 515C>T, 519T>A, 520T>C, 529A>T, 535T>C, 538A>T, 541A>T, 547T>C, 559G>A, 570G>A, 573G>A, 575C>T, 577G>A, 578C>T, 579A>C, 586G>A, 587T>A, 592T>C, 610T>C, 619C>T, 628C>T, 634T>C, 652C>T, 662T>C, 665T>A, 685G>A, 739C>T, 754G>A, 755T>A, 757G>A, 779T>C, 784C>T, 787G>T, 790A>G, 793T>C, 799A>G, 805T>C, 808G>A, 814C>A, 820C>T, 829A>G, 833T>A, 835G>A, 844C>T, 853T>C, 862G>A, 865T>C, 889C>T, 898A>G, 901T>C, 902T>C, 907T>A, 919G>A, 964C>T, 970T>C, 976A>T, 991G>A, 994G>A, 997G>A, 1000C>T, 1015G>T, 1018A>G, 1024T>C, 1027A>C, 1028A>G, 1030A>G, 1042G>A, 1060G>A, 1078C>T, 1102A>G, 1105C>T, 1111A>G, 1138C>T, 1141A>G, 1144G>A, 1147A>G, 1151T>C, 1156A>G, 1180A>G, 1185G>A, 1186A>G, 1189G>A, 1192A>G, 1210G>A, 1219C>T, 1231G>A, 1234G>C, 1235T>C, 1264C>T, 1270T>C, 1271G>A, 1274C>T, 1276C>G, 1294C>T, 1315T>A, 1324C>T, 1342A>G, 1345G>A, 1348T>C, 1351G>A, 1363T>C, 1369T>C, 1372T>C, 1393T>C, 1411C>T, 1414T>C, 1420C>T, 1423C>T, 1432T>C, 1435G>A, 1441A>G, 1450C>T, 1471T>G, 1474T>G, 1475G>T, 1489T>C, 1491A>G, 1498G>A, 1507A>G, 1516T>C, 1519C>T, 1526T>G, 1531C>T, 1536A>G, 1546T>C, 1549T>C, 1552C>T, 1558G>A, 1573T>C, 1576T>C, 1582G>A, 1591T>C, 1594T>C, 1597T>C, 1600C>T, 1606C>T, 1609A>G, 1612T>C, 1618A>G, 1621A>G, 1624A>G, 1630T>C, 1642C>T, 1654T>C, 1660C>T, 1663C>T, 1669C>T, 1679T>C, 1681A>G, 1690T>C, 1699C>T, 1711G>T, 1717T>C, 1723T>C, 1729T>C, 1732G>A, 1756T>C, 1761C>T, 1765A>C, 1768C>T, 1780C>T, 1795A>G, 1813T>C, 1834T>C, 1858T>A, 1873G>A, 1882A>G, 1888T>C, 1897T>C, 1900A>G, 1928C>T, 1933C>T, 1939G>A, 1951G>A, 1952A>G, 1953T>C, 1954G>A, 1960T>C, 1963G>A, 1972C>T, 1987A>G, 1999T>C, 2002G>A, 2005A>G, 2011C>T, 2017A>G, 2020C>T, 2026T>C, 2032T>C, 2038C>T, 2041C>T, 2044T>C, 2047A>G, 2057C>T, 2080G>A, 2082A>T, 2083C>T, 2086G>A, 2087T>C, 2089A>G, 2099A>G, 2101C>T, 2103C>T, 2107T>C, 2116C>T, 2119T>C, 2122C>T, 2128C>T, 2140G>C, 2143C>T, 2164C>T, 2167G>A, 2170C>T, 2173G>A, 2194C>T, 2197A>G, 2218G>A, 2230G>A, 2235G>A, 2251C>T, 2252A>G, 2265G>A, 2266T>G, 2272G>A, 2282G>A, 2287C>T, 2296T>C, 2299G>A, 2320T>C, 2321G>A, 2339G>A, 2341T>C, 2344G>A, 2346A>G, 2351A>G, 2353T>C, 2371A>G, 2377C>T, 2380C>T, 2386A>G, 2393C>T, 2395T>G, 2401T>C, 2407G>A, 2410T>C, 2416T>C, 2428C>T, 2429A>G, 2431T>C, 2455C>T, 2467A>G, 2493T>C, 2518T>A, 2533G>A, 2540G>A, 2542T>C, 2555G>A, 2557T>C, 2566T>C, 2581C>T, 2587T>C, 2593C>G, 2599C>T, 2602T>C, 2603G>A, 2626C>T, 2632C>T, 2641A>G, 2651T>A, 2659T>C, 2662T>C, 2680C>T, 2704G>A, 2722A>G, 2725A>G, 2728C>T, 2740A>G, 2742A>G, 2743C>T, 2755T>C, 2761G>A, 2764A>G, 2779A>G, 2782T>C, 2785G>A, 2788T>C, 2806C>T, 2818C>T, 2821A>G, 2824G>A, 2839A>G, 2842A>G, 2857A>G, 2866T>C, 2884G>A, 2893A>G, 2899G>A, 2902G>A, 2914C>T, 2915T>C, 2926T>C, 2935C>T, 2941G>A, 2944G>A, 2953C>T, 2962G>A, 2965T>C, 2971A>G, 2974G>A, 2975C>T, 2986T>C, 2989C>T, 3001T>G, 3015G>A, 3021A>G, 3028A>G, 3043T>C, 3052G>A, 3073T>C, 3079T>A, 3088T>C, 3097C>T, 3115T>C, 3137C>A, 3151G>A, 3154T>C, 3155T>C, 3163G>A, 3169T>A, 3173A>G, 3181A>G, 3184G>A, 3187T>C, 3190A>G, 3205G>A, 3208T>C, 3223A>G, 3235A>G, 3245C>T, 3256T>C, 3259G>A, 3262C>T, 3265A>G, 3268G>C, 3271C>T, 3281T>C, 3292G>A, 3295A>G, 3296C>T, 3298A>C, 3304A>G, 3317T>C, 3319G>A, 3325C>T, 3328A>G, 3334A>G, 3343A>G, 3355A>C, 3373G>A, 3376T>C, 3379A>G, 3391C>T, 3394A>G, 3403T>C, 3415T>C, 3427C>T, 3430C>T, 3442C>T, 3451T>C, 3457C>T, 3460T>C, 3472G>T, 3481C>T, 3482A>G, 3484A>G, 3493A>G, 3508T>C, 3511C>A, 3517A>G, 3520A>G, 3550C>T, 3553G>A, 3556G>A, 3559A>G, 3562C>T, 3574C>T, 3589A>G, 3592C>A, 3598C>T, 3611T>C, 3616T>C, 3633A>C, 3634G>A, 3637C>T, 3646G>A, 3649T>C, 3652G>A, 3655T>C, 3664A>G, 3674C>T, 3688T>C, 3712C>T, 3724C>T, 3727A>G, 3733G>A, 3742C>T, 3746T>C, 3751A>G, 3757T>C, 3766C>G, 3770C>T, 3775A>G, 3784T>A, 3799A>G, 3817G>A, 3823G>A, 3835A>G, 3850T>C, 3856A>G, 3868C>T, 3875C>G, 3877A>G, 3886A>G, 3892G>A, 3895G>A, 3898A>T, 3904A>G, 3910C>T, 3928C>T, 3931C>T, 3934C>T, 3952G>A, 3988A>G, 3989T>C, 4012T>C, 4024C>T, 4030G>A, 4033A>G, 4059G>C, 4066T>C, 4072C>T, 4076C>T, 4078G>A, 4081C>T, 4084G>A, 4102C>T, 4111A>G, 4135T>C, 4136C>T, 4141A>G, 4165G>A, 4168T>C, 4177G>A, 4183G>T, 4198T>C, 4210A>T, 4214G>A, 4216C>T, 4222A>T, 4225T>C, 4249T>C, 4258T>C, 4267C>T, 4273A>G, 4276T>C, 4278A>C, 4285T>C, 4303C>T, 4306G>A, 4312C>T, 4324A>G, 4336A>G, 4345C>T, 4346T>C, 4363G>A, 4378G>A, 4379A>C, 4381T>C, 4382C>T, 4387C>T, 4390A>G, 4391A>G, 4392A>T, 4393G>A, 4396T>C, 4399A>G, 4402A>G, 4411C>T, 4417C>T, 4424A>G, 4432A>G, 4435T>C, 4443A>C, 4456T>C, 4462C>T, 4465C>T, 4471C>T, 4498T>C, 4516C>T, 4522C>T, 4534T>C, 4540G>A, 4543T>C, 4561C>T, 4563T>C, 4564T>C, 4567C>A, 4576T>C, 4585T>C, 4588C>T, 4591C>T, 4594C>T, 4612G>T, 4639G>A, 4642G>A, 4654A>G, 4657T>C, 4659A>G, 4660G>A, 4666C>T, 4672G>A, 4678G>A, 4693G>A, 4699G>A, 4711T>C, 4720G>A, 4727G>A, 4738C>T, 4750G>A, 4774C>T, 4786G>A, 4792A>G, 4798C>T, 4807T>C, 4819T>C, 4831C>T, 4834T>C, 4842A>G, 4864A>T, 4897T>C, 4898T>C, 4900G>A, 4906C>G, 4912T>C, 4915A>T, 4933C>T, 4951G>A, 4952C>T, 4969G>A, 4972G>A, 5029G>A, 5032T>C, 5109G>A, 5110C>A, 5111T>C, 5118A>G, 5122A>G, 5123T>G, 5124G>T, 5125G>C, 5126T>C, 5127G>A, 5133G>A, 5134G>A, 5135T>C, 5141A>C, 5149C>T, 5150T>C, 5153C>T, 5160A>G, 5161C>T, 5162C>T, 5168A>T, 5169C>T, 5171T>G, 5174A>G, 5177G>C, 5180G>A, 5182C>T, 5186G>T, 5189T>C, 5190T>G, 5192A>C, 5195A>T, 5198C>G, 5201C>A, 5204A>T, 5205C>G, 5207C>A, 5208A>G, 5210C>G, 5217A>C, 5219C>A, 5223A>G, 5225T>A, 5228A>T, 5244T>A, 5245T>A, 5246A>C, 5255G>A, 5258G>A, 5261T>C, 5264C>T, 5265A>G, 5266A>G, 5276C>T, 5279G>A, 5282T>A, 5285A>C, 5288C>T, 5289C>A, 5291C>A, 5295T>G, 5297G>T, 5300C>A, 5303G>T, 5307G>A, 5309C>A, 5314T>G, 5315A>G, 5317A>G, 5318T>C, 5319T>G, 5320T>C, 5322G>C, 5323A>C, 5324A>C, 5333C>T, 5336A>T, 5337C>T, 5339A>G, 5345A>T, 5351A>T, 5352G>T, 5354A>C, 5357C>T, 5358C>T, 5360C>G, 5361T>G, 5363T>C, 5372T>C, 5384G>A, 5390G>T, 5391G>T, 5396G>A, 5402A>G, 5406C>A, 5408A>C, 5411G>C, 5414T>G, 5420T>C, 5429A>C, 5432T>C, 5435A>G, 5439C>A, 5441G>C, 5442G>A, 5444G>A, 5450C>A, 5456T>C, 5459C>A, 5462T>A, 5463C>A, 5468T>C, 5472T>A, 5473T>C, 5474A>T, 5478A>G, 5479A>G, 5481A>T, 5483A>G, 5489T>C, 5490G>A, 5496A>G, 5498A>C, 5510T>C, 5513T>C, 5514G>A, 5519T>A, 5520A>G, 5522T>A, 5532A>C, 5533C>A, 5534T>A, 5537A>G, 5543A>T, 5546T>G, 5550T>A, 5552G>T, 5556C>T, 5558T>A, 5561T>C, 5567T>C, 5581T>A, 5582T>C, 5594G>A, 5595C>T, 5596A>C, 5597G>A, 5603A>C, 5606G>C, 5608G>C, 5609G>C, 5612G>C, 5614G>A, 5616C>T, 5618T>G, 5619G>A, 5628C>T, 5630T>G, 5633T>C, 5636T>A, 5639T>A, 5645A>G, 5646T>G, 5652G>A, 5653G>A, 5655T>G, 5657T>C, 5660T>G, 5663T>C, 5669A>C, 5675T>A, 5678C>T, 5681C>T, 5684C>T, 5685A>C, 5687G>A, 5690G>T, 5693T>C, 5696C>G, 5697C>A, 5702T>A, 5708T>C, 5720T>C, 5722A>T, 5723T>A, 5725A>T, 5732C>G, 5735C>A, 5738T>C, 5741T>A, 5750T>A, 5752A>G, 5756C>T, 5762C>A, 5766A>T, 5768A>T, 5769C>G, 5774T>A, 5775A>G, 5777C>T, 5780G>A, 5784A>G, 5786A>T, 5788G>A, 5793T>A, 5795A>G, 5801C>T, 5804C>A, 5813T>C, 5814G>A, 5816A>T, 5820A>T, 5822A>G, 5825T>A, 5826G>A, 5829C>T, 5831C>G, 5833A>T, 5837C>G, 5838A>G, 5840T>C, 5845A>G, 5847G>A, 5848A>G, 5849G>T, 5850A>G, 5851G>C, 5852T>C, 5853C>T, 5855G>T, 5858G>T, 5861G>T, 5867C>A, 5870G>A, 5876G>C, 5879A>G, 5883G>A, 5885A>G, 5886C>A, 5887T>C, 5888A>T, 5894G>C, 5896A>T, 5900G>C, 5902A>T, 5903G>A, 5906C>T, 5909G>T, 5912T>C, 5915G>A, 5918C>G, 5919C>T, 5920T>C, 5921C>T, 5925A>G, 5926C>T, 5927G>C, 5928G>A, 5929C>A, 5930G>C, 5937T>A, 5939G>C, 5945G>A, 5948C>G, 5949C>G, 5950G>A, 5951G>C, 5952A>G, 5956A>C, 5957T>C, 5960G>T, 5962A>T, 5963G>T, 5964G>C, 5965T>C, 5966G>A, 5967A>G, 5969T>C, 5970G>A, 5972G>T, 5973G>C, 5974A>G, 5975A>T, 5979_5984delCATGTT, 5986G>A, 5987G>C, 5989A>C, 5990T>A, 5994C>A, 5996G>T, 5997G>T, 5999C>G, 6000A>G, 6003A>T, 6004A>C, 6006A>C, 6007T>A, 6008C>A, 6011C>T, 6012G>T, 6016C>A, 6018C>A, 6019C>G, 6022T>A, 6023T>C, 6035G>A, 6038T>A, 6039G>A, 6044G>A, 6047T>C, 6056C>A, 6069T>G, 6070C>T, 6071T>G, 6074C>G, 6078C>A, 6080C>T, 6081T>C, 6082T>A, 6083T>A, 6089A>G, 6092A>C, 6094G>C, 6098G>A, 6100G>C, 6101A>C, 6102G>A, 6103A>C, 6104C>A, 6105C>A, 6106A>G, 6107T>G, 6108G>A, 6109A>C, 6110T>A, 6115C>G, 6118G>C, 6119C>G, 6119_6120insACC, 6120A>C, 6122G>C, 6123A>G, 6125T>C, 6128T>C, 6129G>A, 6131T>A, 6134A>T, 6135G>A, 6136T>C, 6138A>G, 6140T>G, 6141G>T, 6142C>A, 6143A>C, 6146C>T, 6147A>G, 6148A>G, 6149C>G, 6150T>A, 6151C>G, 6152T>C, 6156A>G, 6158A>C, 6162A>T, 6164C>T, 6171T>C, 6176C>T, 6177G>A, 6178C>G, 6179T>A, 6180A>G, 6182A>T, 6186A>T, 6190G>C, 6194A>T, 6195T>G, 6196G>A, 6197G>C, 6198G>A, 6199A>C, 6203A>C, 6204G>A, 6206C>T, 6210G>T, 6212G>T, 6213C>G, 6215C>A, 6217T>C, 6218C>T, 6225C>A, 6226C>A, 6227T>C, 6230T>A, 6236T>C, 6239T>C, 6245T>C, 6248C>T, 6249T>G, 6251G>T, 6252T>A, 6254T>C, 6255G>C, 6257A>G, 6263A>T, 6264G>A, 6267T>A, 6268T>C, 6271A>C, 6272_6273insCCCCGAAATGAACCCCAA, 6275G>A, 6279A>G, 6280C>T, 6281A>G, 6287C>A, 6289A>G, 6293T>C, 6296T>A, 6299A>C, 6300G>A, 6301C>G, 6302C>A, 6303T>A, 6304T>A, 6305A>C, 6307C>T, 6308A>T, 6310T>A, 6315A>G, 6318G>C, 6319G>A, 6320A>C, 6321T>C, 6329T>C, 6330C>G, 6335G>A, 6344C>T, 6350T>G, 6353T>C, 6356A>G, 6359A>G, 6360A>C, 6362T>C, 6365T>C, 6371T>C, 6377C>T, 6378C>A, 6379A>C, 6380C>T, 6383T>G, 6386T>C, 6387C>G, 6388T>G, 6389T>A, 6390A>T, 6391A>G, 6392A>C, 6393G>A, 6395A>C, 6398T>G, 6399G>T, 6400T>A, 6401G>C, 6402G>C, 6404G>C, 6405G>A, 6408C>A, 6409C>T, 6410A>G, 6412T>A, 6413T>C, 6414A>T, 6416T>G, 6419T>C, 6425C>G, 6426T>C, 6428G>C, 6431T>C, 6434A>G, 6441A>G, 6443C>G, 6447C>T, 6450C>T, 6452T>C, 6458A>G, 6462T>G, 6464G>A, 6470C>A, 6471T>G, 6479A>T, 6485A>G, 6488A>T, 6492A>C, 6494T>A, 6497G>A, 6501A>G, 6502C>T, 6503A>G, 6509A>G, 6518A>T, 6519C>A, 6521T>G, 6525C>T, 6527A>G, 6533A>G, 6534G>T, 6535C>G, 6536A>T, 6539A>G, 6540T>C, 6542A>T, 6545C>T, 6547G>A, 6548G>A, 6549A>T, 6550G>C, 6551T>A, 6554T>C, 6557C>T, 6558A>G, 6560C>T, 6569C>T, 6570A>C, 6572T>C, 6578T>C, 6579A>C, 6580G>A, 6581C>A, 6582A>C, 6583G>A, 6584A>T, 6585C>G, 6586C>A, 6587G>T, 6588A>T, 6590T>G, 6593G>T, 6594G>A, 6596A>C, 6599A>C, 6600G>C, 6602T>C, 6611C>T, 6614C>T, 6617G>A, 6623C>T, 6626T>C, 6632T>C, 6635T>C, 6638A>G, 6644T>C, 6645T>A, 6647T>A, 6664C>A, 6668A>G, 6670A>C, 6671T>G, 6677C>T, 6681A>C, 6683G>T, 6685T>C, 6686G>A, 6687C>T, 6688A>T, 6689G>A, 6706T>C, 6707A>T, 6709A>T, 6712G>T, 6715G>A, 6716C>T, 6718T>G, 6721T>A, 6722G>T, 6723G>C, 6728A>G, 6730A>C, 6731G>C, 6733C>T, 6734A>G, 6735C>G, 6737A>T, 6738A>C, 6742C>A, 6743A>C, 6748C>T, 6751A>C, 6754T>A, 6755G>A, 6757G>C, 6760C>T, 6770A>G, 6771A>G, 6772T>G, 6775A>C, 6778A>C, 6790A>T, 6793C>A, 6802C>T, 6807A>G, 6808G>A, 6809C>A, 6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT, 6817G>A, 6826T>C, 6829C>T, 6830A>C, 6832C>A, 6838T>C, 6850G>C, 6856T>A, 6860G>A, 6862C>T, 6863C>G, 6875C>A, 6878C>T, 6883G>A, 6884G>C, 6885C>A, 6886T>G, 6889T>A, 6895T>G, 6896G>A, 6897C>G, 6899A>G, 6901C>T, 6903G>A, 6909G>C, 6910G>A, 6911G>A, 6914T>C, 6916G>C, 6917A>C, 6918C>T, 6919C>A, 6921C>A, 6925C>T, 6928C>A, 6934C>T, 6935C>G, 6936C>A, 6937C>G, 6940T>A, 6949A>C, 6950A>C, 6952A>T, 6959G>A, 6961T>C, 6964T>C, 6967A>C, 6970T>C, 6976T>A, 6977C>A, 6979G>A, 6980G>A, 6981T>C, 6985A>G, 6993A>G, 6994T>C, 7000C>A, 7003A>G, 7006T>C, 7012C>T, 7017G>A, 7018A>T, 7021C>T, 7023C>G, 7026A>C, 7027A>T, 7030C>A, 7033T>A, 7034A>T, 7035C>A, 7037T>A, 7038T>A, 7039C>T, 7040T>G, 7042C>A, 7045T>C, 7046G>C, 7048A>C, 7051C>T, 7052A>T, 7056A>C, 7057T>C, 7058G>C, 7059T>C, 7060T>C, 7061T>C, 7062C>A, 7063T>A, 7065A>C, 7066T>C, 7067G>T, 7069C>G, 7070A>G, 7072A>G, 7073A>G, 7075T>A, 7076G>C, 7078C>A, 7079G>C, 7080A>C, 7081C>A, 7082C>G, 7083T>G, 7084G>A, 7086C>G, 7087C>A, 7088A>G, 7089A>C, 7090G>T, 7093G>T, 7094A>C, 7095C>T, 7096A>T, 7097T>A, 7098C>G, 7099A>G, 7102C>T, 7105A>T, 7106C>G, 7107C>T, 7108A>C, 7109G>C, 7111T>C, 7112C>G, 7114T>C, 7115G>C, 7116C>G, 7118C>G, 7119C>G, 7121G>T, 7122T>C, 7123T>C, 7129A>C, 7130C>A, 7132T>G, 7133A>T, 7134G>T, 7139G>A, 7140T>A, 7142G>T, 7144C>T, 7149C>T, 7150A>T, 7152T>C, 7153C>T, 7154T>A, 7156C>T, 7157A>T, 7159C>T, 7160C>G, 7161G>T, 7162C>G, 7164C>A, 7165A>T, 7166A>T, 7168C>A, 7169T>A, 7170T>A, 7171G>T, 7172A>C, 7173T>A, 7174T>A, 7176G>C, 7178G>A, 7179G>C, 7180G>C, 7183T>A, 7184T>A, 7186C>G, 7188A>G, 7189T>A, 7191C>T, 7193T>G, 7194C>G, 7199T>A, 7200T>C, 7205A>G, 7207G>T, 7208A>T, 7209G>C, 7211T>G, 7212C>G, 7214T>A, 7216T>C, 7222T>C, 7225T>G, 7226T>A, 7227C>G, 7228T>C, 7230A>T, 7231A>C, 7234C>G, 7235_7240delACCTCC, 7243C>A, 7244T>A, 7247T>G, 7249T>A, 7250C>A, 7255C>T, 7258T>G, 7259G>A, 7260A>G, 7261G>C, 7267G>T, 7268C>G, 7269G>A, 7270C>G, 7271A>G, 7272G>A, 7273C>T, 7279C>T, 7283G>A, 7284C>A, 7285A>T, 7286C>T, 7289G>T, 7290A>C, 7291G>A, 7296A>T, 7306A>G, 7309G>C, 7311T>A, 7312A>T, 7313C>A, 7314G>A, 7317C>T, 7318A>C, 7319G>T, 7321C>G, 7323A>T, 7327G>C, 7330G>C, 7333T>A, 7336C>A, 7342T>C, 7346G>T, 7348T>C, 7354T>C, 7355A>C, 7357T>A, 7378A>C, 7384G>A, 7402A>T, 7403T>G, 7404C>G, 7405T>C, 7408A>T, 7411T>C, 7417C>G, 7419A>G, 7423A>G, 7426A>G, 7429G>T, 7432A>C, 7441T>C, 7442C>A, 7444C>T, 7447T>C, 7448C>A, 7449G>A, 7451A>C, 7464A>G, 7465A>G, 7468T>G, 7471G>A
CDS
4170099.8%1134196.2%1697 (100%)1622 (95.6%)0/0/0/01
Protein mutations:A13V (42C>T), N15D (47A>G), M28V (86A>G), I52K (159T>A), K67N (205G>T), P79I (239C>A 240C>T), E94D (286G>C), T96S (290A>T), G102E (309G>A 310T>A), T104S (314A>T 316C>T), K163R (492A>G), T167A (503A>G), F172Y (519T>A 520T>C), R189K (570G>A), R190K (573G>A), H192S (578C>T 579A>C), S195T (587T>A), C221S (665T>A), L251I (755T>A 757G>A), L277I (833T>A 835G>A), I342V (1028A>G 1030A>G), R394K (1185G>A 1186A>G), M402I (1210G>A), A423T (1271G>A), V491L (1475G>T), K496R (1491A>G), L508V (1526T>G), K511R (1536A>G), A586V (1761C>T), D618E (1858T>A), P642S (1928C>T), M650A (1952A>G 1953T>C 1954G>A), Y693F (2082A>T 2083C>T), T699A (2099A>G 2101C>T), P700L (2103C>T), R744K (2235G>A), I750V (2252A>G), S754K (2265G>A 2266T>G), G760S (2282G>A), M765I (2299G>A), D773N (2321G>A), V779I (2339G>A 2341T>C), N781S (2346A>G), T783A (2351A>G 2353T>C), I809V (2429A>G 2431T>C), V830A (2493T>C), D846N (2540G>A 2542T>C), A851T (2555G>A 2557T>C), D863E (2593C>G), V867I (2603G>A), S883T (2651T>A), N913S (2742A>G 2743C>T), R1004K (3015G>A), N1006S (3021A>G), Q1045K (3137C>A), S1051P (3155T>C), I1057V (3173A>G), P1098S (3296C>T 3298A>C), I1160V (3482A>G 3484A>G), K1210T (3633A>C 3634G>A), P1224S (3674C>T), D1254E (3766C>G), Q1291E (3875C>G 3877A>G), G1352A (4059G>C), E1393D (4183G>T), V1404I (4214G>A 4216C>T), K1425T (4278A>C), N1459H (4379A>C 4381T>C), K1463V (4391A>G 4392A>T 4393G>A), M1474V (4424A>G), K1480T (4443A>C), I1520T (4563T>C 4564T>C), K1552R (4659A>G 4660G>A), D1575N (4727G>A), E1613G (4842A>G)
Codon mutations:TCT5TCG (19T>G), GCT13GTT (42C>T), AAC15GAC (47A>G), ATG28GTG (86A>G), AGT31AGC (97T>C), ACA35ACT (109A>T), GCA42GCG (130A>G), ATA52AAA (159T>A), CCC60CCT (184C>T), ACC61ACT (187C>T), GTC65GTT (199C>T), AAG67AAT (205G>T), ATC68ATT (208C>T), CCT69CCC (211T>C), CCT71CCC (217T>C), GGG75GGA (229G>A), CCA79ATA (239C>A 240C>T), TAC83TAT (253C>T), AGC84AGT (256C>T), GGC88GGT (268C>T), GAG94GAC (286G>C), ACC96TCC (290A>T), ACT97ACC (295T>C), CAG100CAA (304G>A), GGT102GAA (309G>A 310T>A), ACC104TCT (314A>T 316C>T), GCG107GCC (325G>C), GTT110GTC (334T>C), CCC111CCT (337C>T), CAA115CAG (349A>G), AGG119AGA (361G>A), GAC120GAT (364C>T), GCC121GCT (367C>T), GAG123GAA (373G>A), CTA125CTT (379A>T), ATC129ATT (391C>T), GAG136GAA (412G>A), TAC140TAT (424C>T), GAA145GAG (439A>G), CTT150CTA (454T>A), CCG156CCA (472G>A), GCC162GCT (490C>T), AAG163AGG (492A>G), GAA165GAG (499A>G), ACA167GCA (503A>G), TCT170TCC (514T>C), CTG171TTG (515C>T), TTT172TAC (519T>A 520T>C), CCA175CCT (529A>T), TAT177TAC (535T>C), ACA178ACT (538A>T), CCA179CCT (541A>T), TAT181TAC (547T>C), CCG185CCA (559G>A), AGG189AAG (570G>A), AGA190AAA (573G>A), CTG191TTA (575C>T 577G>A), CAC192TCC (578C>T 579A>C), GAG194GAA (586G>A), TCG195ACG (587T>A), TTT196TTC (592T>C), GAT202GAC (610T>C), TGC205TGT (619C>T), TTC208TTT (628C>T), TGT210TGC (634T>C), AAC216AAT (652C>T), TTG220CTG (662T>C), TGC221AGC (665T>A), AGG227AGA (685G>A), ACC245ACT (739C>T), AAG250AAA (754G>A), TTG251ATA (755T>A 757G>A), TTG259CTG (779T>C), TGC260TGT (784C>T), GCG261GCT (787G>T), CTA262CTG (790A>G), TCT263TCC (793T>C), CTA265CTG (799A>G), ACT267ACC (805T>C), AGG268AGA (808G>A), ATC270ATA (814C>A), GAC272GAT (820C>T), GGA275GGG (829A>G), TTG277ATA (833T>A 835G>A), CTC280CTT (844C>T), CTT283CTC (853T>C), TTG286TTA (862G>A), GCT287GCC (865T>C), GGC295GGT (889C>T), GAA298GAG (898A>G), TCT299TCC (901T>C), TTG300CTG (902T>C), ATT301ATA (907T>A), GAG305GAA (919G>A), ATC320ATT (964C>T), CCT322CCC (970T>C), CTA324CTT (976A>T), CTG329CTA (991G>A), CAG330CAA (994G>A), GGG331GGA (997G>A), CCC332CCT (1000C>T), GTG337GTT (1015G>T), GAA338GAG (1018A>G), GTT340GTC (1024T>C), CCA341CCC (1027A>C), ATA342GTG (1028A>G 1030A>G), GGG346GGA (1042G>A), GGG352GGA (1060G>A), ATC358ATT (1078C>T), GCA366GCG (1102A>G), TCC367TCT (1105C>T), TTA369TTG (1111A>G), TAC378TAT (1138C>T), GGA379GGG (1141A>G), CTG380CTA (1144G>A), GAA381GAG (1147A>G), TTA383CTA (1151T>C), AAA384AAG (1156A>G), CCA392CCG (1180A>G), AGA394AAG (1185G>A 1186A>G), GAG395GAA (1189G>A), GAA396GAG (1192A>G), ATG402ATA (1210G>A), TCC405TCT (1219C>T), GCG409GCA (1231G>A), GTG410GTC (1234G>C), TTG411CTG (1235T>C), CAC420CAT (1264C>T), ACT422ACC (1270T>C), GCC423ACC (1271G>A), CTC424TTG (1274C>T 1276C>G), AGC430AGT (1294C>T), ACT437ACA (1315T>A), CTC440CTT (1324C>T), AGA446AGG (1342A>G), AAG447AAA (1345G>A), CTT448CTC (1348T>C), TCG449TCA (1351G>A), GCT453GCC (1363T>C), CCT455CCC (1369T>C), GAT456GAC (1372T>C), GCT463GCC (1393T>C), GCC469GCT (1411C>T), GCT470GCC (1414T>C), CGC472CGT (1420C>T), TCC473TCT (1423C>T), CAT476CAC (1432T>C), CGG477CGA (1435G>A), AAA479AAG (1441A>G), CTC482CTT (1450C>T), GTT489GTG (1471T>G), GTT490GTG (1474T>G), GTG491TTG (1475G>T), GGT495GGC (1489T>C), AAG496AGG (1491A>G), GGG498GGA (1498G>A), AAA501AAG (1507A>G), CTT504CTC (1516T>C), GCC505GCT (1519C>T), TTG508GTG (1526T>G), GCC509GCT (1531C>T), AAA511AGA (1536A>G), GCT514GCC (1546T>C), TCT515TCC (1549T>C), CTC516CTT (1552C>T), GGG518GGA (1558G>A), GGT523GGC (1573T>C), CTT524CTC (1576T>C), CCG526CCA (1582G>A), GGT529GGC (1591T>C), GTT530GTC (1594T>C), GAT531GAC (1597T>C), CAC532CAT (1600C>T), GAC534GAT (1606C>T), GCA535GCG (1609A>G), TAT536TAC (1612T>C), GGA538GGG (1618A>G), GAA539GAG (1621A>G), AGA540AGG (1624A>G), GTT542GTC (1630T>C), GAC546GAT (1642C>T), AGT550AGC (1654T>C), CCC552CCT (1660C>T), ATC553ATT (1663C>T), GAC555GAT (1669C>T), TTA559CTG (1679T>C 1681A>G), CTT562CTC (1690T>C), ACC565ACT (1699C>T), ACG569ACT (1711G>T), AAT571AAC (1717T>C), GAT573GAC (1723T>C), ATT575ATC (1729T>C), GAG576GAA (1732G>A), AGT584AGC (1756T>C), GCC586GTC (1761C>T), ATA587ATC (1765A>C), ATC588ATT (1768C>T), AAC592AAT (1780C>T), GCA597GCG (1795A>G), AAT603AAC (1813T>C), CGT610CGC (1834T>C), GAT618GAA (1858T>A), GAG623GAA (1873G>A), AAA626AAG (1882A>G), GAT628GAC (1888T>C), GGT631GGC (1897T>C), CAA632CAG (1900A>G), CCT642TCT (1928C>T), GAC643GAT (1933C>T), TCG645TCA (1939G>A), CTG649CTA (1951G>A), ATG650GCA (1952A>G 1953T>C 1954G>A), GCT652GCC (1960T>C), CCG653CCA (1963G>A), GGC656GGT (1972C>T), GGA661GGG (1987A>G), CAT665CAC (1999T>C), GGG666GGA (2002G>A), AAA667AAG (2005A>G), GTC669GTT (2011C>T), AAA671AAG (2017A>G), ACC672ACT (2020C>T), ACT674ACC (2026T>C), GGT676GGC (2032T>C), CTC678CTT (2038C>T), ATC679ATT (2041C>T), GCT680GCC (2044T>C), CGA681CGG (2047A>G), CTA685TTA (2057C>T), GAG692GAA (2080G>A), TAC693TTT (2082A>T 2083C>T), GAG694GAA (2086G>A), TTA695CTG (2087T>C 2089A>G), ACC699GCT (2099A>G 2101C>T), CCC700CTC (2103C>T), ACT701ACC (2107T>C), AAC704AAT (2116C>T), TTT705TTC (2119T>C), GAC706GAT (2122C>T), AAC708AAT (2128C>T), GCG712GCC (2140G>C), TTC713TTT (2143C>T), AAC720AAT (2164C>T), AAG721AAA (2167G>A), TAC722TAT (2170C>T), GGG723GGA (2173G>A), GTC730GTT (2194C>T), GGA731GGG (2197A>G), AGG738AGA (2218G>A), GAG742GAA (2230G>A), AGA744AAA (2235G>A), AAC749AAT (2251C>T), ATC750GTC (2252A>G), AGT754AAG (2265G>A 2266T>G), CAG756CAA (2272G>A), GGT760AGT (2282G>A), GGC761GGT (2287C>T), TAT764TAC (2296T>C), ATG765ATA (2299G>A), GGT772GGC (2320T>C), GAT773AAT (2321G>A), GTT779ATC (2339G>A 2341T>C), CAG780CAA (2344G>A), AAC781AGC (2346A>G), ACT783GCC (2351A>G 2353T>C), GAA789GAG (2371A>G), GCC791GCT (2377C>T), GGC792GGT (2380C>T), CTA794CTG (2386A>G), CTT797TTG (2393C>T 2395T>G), TGT799TGC (2401T>C), AGG801AGA (2407G>A), ATT802ATC (2410T>C), TAT804TAC (2416T>C), TGC808TGT (2428C>T), ATT809GTC (2429A>G 2431T>C), ATC817ATT (2455C>T), GGA821GGG (2467A>G), GTC830GCC (2493T>C), CTT838CTA (2518T>A), CAG843CAA (2533G>A), GAT846AAC (2540G>A 2542T>C), GCT851ACC (2555G>A 2557T>C), GAT854GAC (2566T>C), CCC859CCT (2581C>T), GAT861GAC (2587T>C), GAC863GAG (2593C>G), TTC865TTT (2599C>T), GTT866GTC (2602T>C), GTT867ATT (2603G>A), ACC874ACT (2626C>T), GGC876GGT (2632C>T), GGA879GGG (2641A>G), TCT883ACT (2651T>A), CGT885CGC (2659T>C), GGT886GGC (2662T>C), TTC892TTT (2680C>T), GAG900GAA (2704G>A), AAA906AAG (2722A>G), AGA907AGG (2725A>G), ATC908ATT (2728C>T), AGA912AGG (2740A>G), AAC913AGT (2742A>G 2743C>T), TCT917TCC (2755T>C), GAG919GAA (2761G>A), GAA920GAG (2764A>G), AGA925AGG (2779A>G), GAT926GAC (2782T>C), AAG927AAA (2785G>A), TAT928TAC (2788T>C), ATC934ATT (2806C>T), ACC938ACT (2818C>T), GAA939GAG (2821A>G), GAG940GAA (2824G>A), GAA945GAG (2839A>G), GAA946GAG (2842A>G), CGA951CGG (2857A>G), ATT954ATC (2866T>C), AAG960AAA (2884G>A), AAA963AAG (2893A>G), GAG965GAA (2899G>A), AGG966AGA (2902G>A), GGC970GGT (2914C>T), TTG971CTG (2915T>C), GGT974GGC (2926T>C), ATC977ATT (2935C>T), AAG979AAA (2941G>A), AGG980AGA (2944G>A), GAC983GAT (2953C>T), AAG986AAA (2962G>A), CCT987CCC (2965T>C), GGA989GGG (2971A>G), AAG990AAA (2974G>A), CTG991TTG (2975C>T), GAT994GAC (2986T>C), GAC995GAT (2989C>T), GTT999GTG (3001T>G), AGA1004AAA (3015G>A), AAT1006AGT (3021A>G), GAA1008GAG (3028A>G), ATT1013ATC (3043T>C), AGG1016AGA (3052G>A), GGT1023GGC (3073T>C), GGT1025GGA (3079T>A), GTT1028GTC (3088T>C), AGC1031AGT (3097C>T), ACT1037ACC (3115T>C), CAG1045AAG (3137C>A), GGG1049GGA (3151G>A), GTT1050GTC (3154T>C), TCC1051CCC (3155T>C), AAG1053AAA (3163G>A), ATT1055ATA (3169T>A), ATA1057GTA (3173A>G), AAA1059AAG (3181A>G), TCG1060TCA (3184G>A), GGT1061GGC (3187T>C), GAA1062GAG (3190A>G), AGG1067AGA (3205G>A), TTT1068TTC (3208T>C), AGA1073AGG (3223A>G), ACA1077ACG (3235A>G), CTA1081TTA (3245C>T), GGT1084GGC (3256T>C), GCG1085GCA (3259G>A), CCC1086CCT (3262C>T), GAA1087GAG (3265A>G), GGG1088GGC (3268G>C), ACC1089ACT (3271C>T), TTA1093CTA (3281T>C), AAG1096AAA (3292G>A), AGA1097AGG (3295A>G), CCA1098TCC (3296C>T 3298A>C), GGA1100GGG (3304A>G), TTG1105CTA (3317T>C 3319G>A), GCC1107GCT (3325C>T), AGA1108AGG (3328A>G), GGA1110GGG (3334A>G), GCA1113GCG (3343A>G), ATA1117ATC (3355A>C), GGG1123GGA (3373G>A), GGT1124GGC (3376T>C), CAA1125CAG (3379A>G), CTC1129CTT (3391C>T), CTA1130CTG (3394A>G), TCT1133TCC (3403T>C), AGT1137AGC (3415T>C), GGC1141GGT (3427C>T), ACC1142ACT (3430C>T), GAC1146GAT (3442C>T), TGT1149TGC (3451T>C), TAC1151TAT (3457C>T), ATT1152ATC (3460T>C), GGG1156GGT (3472G>T), TAC1159TAT (3481C>T), ATA1160GTG (3482A>G 3484A>G), GGA1163GGG (3493A>G), GCT1168GCC (3508T>C), GCC1169GCA (3511C>A), GGA1171GGG (3517A>G), GGA1172GGG (3520A>G), AGC1182AGT (3550C>T), GAG1183GAA (3553G>A), GGG1184GGA (3556G>A), GAA1185GAG (3559A>G), GCC1186GCT (3562C>T), GGC1190GGT (3574C>T), GGA1195GGG (3589A>G), ACC1196ACA (3592C>A), TGC1198TGT (3598C>T), TTA1203CTA (3611T>C), GGT1204GGC (3616T>C), AAG1210ACA (3633A>C 3634G>A), CTC1211CTT (3637C>T), AAG1214AAA (3646G>A), ACT1215ACC (3649T>C), AAG1216AAA (3652G>A), TTT1217TTC (3655T>C), TCA1220TCG (3664A>G), CCA1224TCA (3674C>T), GGT1228GGC (3688T>C), GGC1236GGT (3712C>T), CCC1240CCT (3724C>T), AGA1241AGG (3727A>G), AAG1243AAA (3733G>A), CCC1246CCT (3742C>T), TTG1248CTG (3746T>C), CAA1249CAG (3751A>G), GTT1251GTC (3757T>C), GAC1254GAG (3766C>G), CTG1256TTG (3770C>T), AAA1257AAG (3775A>G), ACT1260ACA (3784T>A), AAA1265AAG (3799A>G), GTG1271GTA (3817G>A), GAG1273GAA (3823G>A), AAA1277AAG (3835A>G), GTT1282GTC (3850T>C), GAA1284GAG (3856A>G), GAC1288GAT (3868C>T), CAA1291GAG (3875C>G 3877A>G), TCA1294TCG (3886A>G), GCG1296GCA (3892G>A), CAG1297CAA (3895G>A), GCA1298GCT (3898A>T), GCA1300GCG (3904A>G), CTC1302CTT (3910C>T), AGC1308AGT (3928C>T), GGC1309GGT (3931C>T), CAC1310CAT (3934C>T), AAG1316AAA (3952G>A), AAA1328AAG (3988A>G), TTG1329CTG (3989T>C), GCT1336GCC (4012T>C), TTC1340TTT (4024C>T), GAG1342GAA (4030G>A), GGA1343GGG (4033A>G), GGT1352GCT (4059G>C), CTT1354CTC (4066T>C), GAC1356GAT (4072C>T), CTG1358TTA (4076C>T 4078G>A), GTC1359GTT (4081C>T), AAG1360AAA (4084G>A), GGC1366GGT (4102C>T), AAA1369AAG (4111A>G), GAT1377GAC (4135T>C), CTG1378TTG (4136C>T), GCA1379GCG (4141A>G), GCG1387GCA (4165G>A), TTT1388TTC (4168T>C), CTG1391CTA (4177G>A), GAG1393GAT (4183G>T), CAT1398CAC (4198T>C), CTA1402CTT (4210A>T), GTC1404ATT (4214G>A 4216C>T), GTA1406GTT (4222A>T), GGT1407GGC (4225T>C), CCT1415CCC (4249T>C), TTT1418TTC (4258T>C), CAC1421CAT (4267C>T), AGA1423AGG (4273A>G), TAT1424TAC (4276T>C), AAG1425ACG (4278A>C), CAT1427CAC (4285T>C), TCC1433TCT (4303C>T), CGG1434CGA (4306G>A), GAC1436GAT (4312C>T), CAA1440CAG (4324A>G), TTA1444TTG (4336A>G), GCC1447GCT (4345C>T), TTA1448CTA (4346T>C), AAG1453AAA (4363G>A), CCG1458CCA (4378G>A), AAT1459CAC (4379A>C 4381T>C), CTG1460TTG (4382C>T), GCC1461GCT (4387C>T), CAA1462CAG (4390A>G), AAG1463GTA (4391A>G 4392A>T 4393G>A), GTT1464GTC (4396T>C), GCA1465GCG (4399A>G), GAA1466GAG (4402A>G), CTC1469CTT (4411C>T), CCC1471CCT (4417C>T), ATG1474GTG (4424A>G), GTA1476GTG (4432A>G), GGT1477GGC (4435T>C), AAA1480ACA (4443A>C), AAT1484AAC (4456T>C), GGC1486GGT (4462C>T), CTC1487CTT (4465C>T), TCC1489TCT (4471C>T), AAT1498AAC (4498T>C), CTC1504CTT (4516C>T), ACC1506ACT (4522C>T), CTT1510CTC (4534T>C), GAG1512GAA (4540G>A), GTT1513GTC (4543T>C), GAC1519GAT (4561C>T), ATT1520ACC (4563T>C 4564T>C), ATC1521ATA (4567C>A), AAT1524AAC (4576T>C), TTT1527TTC (4585T>C), TCC1528TCT (4588C>T), TTC1529TTT (4591C>T), TAC1530TAT (4594C>T), GTG1536GTT (4612G>T), GAG1545GAA (4639G>A), AAG1546AAA (4642G>A), AAA1550AAG (4654A>G), CTT1551CTC (4657T>C), AAG1552AGA (4659A>G 4660G>A), TAC1554TAT (4666C>T), TTG1556TTA (4672G>A), CCG1558CCA (4678G>A), AAG1563AAA (4693G>A), GAG1565GAA (4699G>A), GTT1569GTC (4711T>C), GAG1572GAA (4720G>A), GAT1575AAT (4727G>A), ACC1578ACT (4738C>T), AGG1582AGA (4750G>A), GGC1590GGT (4774C>T), AAG1594AAA (4786G>A), GAA1596GAG (4792A>G), AGC1598AGT (4798C>T), CTT1601CTC (4807T>C), TAT1605TAC (4819T>C), GGC1609GGT (4831C>T), CCT1610CCC (4834T>C), GAA1613GGA (4842A>G), ATA1620ATT (4864A>T), TCT1631TCC (4897T>C), TTG1632CTA (4898T>C 4900G>A), GGC1634GGG (4906C>G), GCT1636GCC (4912T>C), GCA1637GCT (4915A>T), TTC1643TTT (4933C>T), AAG1649AAA (4951G>A), CTG1650TTG (4952C>T), CTG1655CTA (4969G>A), AAG1656AAA (4972G>A), AGG1675AGA (5029G>A), TTT1676TTC (5032T>C)
1536100%271871.2%534 (98.3%)357 (65.7%)7/2/0/01
Protein mutations:A9N (5109G>A 5110C>A 5111T>C), N12D (5118A>G), D13G (5122A>G 5123T>G), G14S (5124G>T 5125G>C 5126T>C), A15T (5127G>A), G17N (5133G>A 5134G>A 5135T>C), A22V (5149C>T 5150T>C), T26V (5160A>G 5161C>T 5162C>T), A33V (5182C>T), S36A (5190T>G 5192A>C), L41V (5205C>G 5207C>A), T42A (5208A>G 5210C>G), N45Q (5217A>C 5219C>A), I47V (5223A>G 5225T>A), L54N (5244T>A 5245T>A 5246A>C), N61G (5265A>G 5266A>G), S71A (5295T>G 5297G>T), V75I (5307G>A 5309C>A), L77W (5314T>G 5315A>G), N78S (5317A>G 5318T>C), L79A (5319T>G 5320T>C), E80P (5322G>C 5323A>C 5324A>C), E84D (5336A>T), A90S (5352G>T 5354A>C), S93A (5361T>G 5363T>C), V103F (5391G>T), L108I (5406C>A 5408A>C), L119I (5439C>A 5441G>C), V120I (5442G>A 5444G>A), H127N (5463C>A), L130T (5472T>A 5473T>C 5474A>T), N132G (5478A>G 5479A>G), I133L (5481A>T 5483A>G), G136S (5490G>A), I138V (5496A>G 5498A>C), V144I (5514G>A), I146V (5520A>G 5522T>A), T150Q (5532A>C 5533C>A 5534T>A), L156I (5550T>A 5552G>T), F166Y (5581T>A 5582T>C), Q171S (5595C>T 5596A>C 5597G>A), E173D (5603A>C), R175T (5608G>C 5609G>C), M176I (5612G>C), R177K (5614G>A), V179I (5619G>A), S188A (5646T>G), G190N (5652G>A 5653G>A), S191A (5655T>G 5657T>C), N213I (5722A>T 5723T>A), Y214F (5725A>T), K223R (5752A>G), T228S (5766A>T 5768A>T), L229V (5769C>G), I231V (5775A>G 5777C>T), I234V (5784A>G 5786A>T), G235E (5788G>A), L237M (5793T>A 5795A>G), V244I (5814G>A 5816A>T), I246L (5820A>T 5822A>G), D247E (5825T>A), E248K (5826G>A), Y250F (5833A>T), S252G (5838A>G 5840T>C), N254S (5845A>G), E255S (5847G>A 5848A>G 5849G>T), S256A (5850A>G 5851G>C 5852T>C), L257F (5853C>T 5855G>T), A267T (5883G>A 5885A>G), L268T (5886C>A 5887T>C 5888A>T), E271V (5896A>T), Q273L (5902A>T 5903G>A), L279S (5919C>T 5920T>C 5921C>T), T281V (5925A>G 5926C>T 5927G>C), A282N (5928G>A 5929C>A 5930G>C), S285T (5937T>A 5939G>C), R289D (5949C>G 5950G>A 5951G>C), I290V (5952A>G), N291T (5956A>C 5957T>C), Q292H (5960G>T), K293I (5962A>T 5963G>T), V294P (5964G>C 5965T>C 5966G>A), S295G (5967A>G 5969T>C), G296S (5970G>A 5972G>T), E297R (5973G>C 5974A>G 5975A>T), H299_V300del (5979_5984delCATGTT), W301Y (5986G>A 5987G>C), N302T (5989A>C 5990T>A), Q304N (5994C>A 5996G>T), V305L (5997G>T 5999C>G), T306A (6000A>G), N307S (6003A>T 6004A>C), I308Q (6006A>C 6007T>A 6008C>A), G310W (6012G>T), T311N (6016C>A), P312S (6018C>A 6019C>G), F313Y (6022T>A 6023T>C), D318E (6038T>A), V319I (6039G>A), S329V (6069T>G 6070C>T 6071T>G), L332I (6078C>A 6080C>T), F333Q (6081T>C 6082T>A 6083T>A), S337T (6094G>C), R339T (6100G>C 6101A>C), D340T (6102G>A 6103A>C 6104C>A), H341R (6105C>A 6106A>G 6107T>G), D342T (6108G>A 6109A>C 6110T>A), A344G (6115C>G), C345S (6118G>C 6119C>G), C345_R346insT (6119_6120insACC), S347G (6123A>G 6125T>C), D349K (6129G>A 6131T>A), V351T (6135G>A 6136T>C), I352V (6138A>G 6140T>G), A353Y (6141G>T 6142C>A 6143A>C), N355G (6147A>G 6148A>G 6149C>G), K358D (6156A>G 6158A>C), T360S (6162A>T 6164C>T), A365R (6177G>A 6178C>G 6179T>A), I366V (6180A>G 6182A>T), I368F (6186A>T), G369A (6190G>C), W371D (6195T>G 6196G>A 6197G>C), E372T (6198G>A 6199A>C), E373D (6203A>C), D374N (6204G>A 6206C>T), V376F (6210G>T 6212G>T), H377E (6213C>G 6215C>A), I378T (6217T>C 6218C>T), P381N (6225C>A 6226C>A 6227T>C), L389V (6249T>G 6251G>T), F390I (6252T>A 6254T>C), E391Q (6255G>C 6257A>G), G394S (6264G>A), F395T (6267T>A 6268T>C), N396T (6271A>C), N396_Q397insPRNEPQ (6272_6273insCCCCGAAATGAACCCCAA), T399V (6279A>G 6280C>T 6281A>G), N402S (6289A>G), A406R (6300G>A 6301C>G 6302C>A), L407N (6303T>A 6304T>A 6305A>C), T408I (6307C>T 6308A>T), L409H (6310T>A), M411V (6315A>G), G412H (6318G>C 6319G>A 6320A>C), P416A (6330C>G), I426L (6360A>C 6362T>C), H432T (6378C>A 6379A>C 6380C>T), I433M (6383T>G), L435G (6387C>G 6388T>G 6389T>A), K436C (6390A>T 6391A>G 6392A>C), G437S (6393G>A 6395A>C), V439Y (6399G>T 6400T>A 6401G>C), A440P (6402G>C 6404G>C), D441N (6405G>A), P442M (6408C>A 6409C>T 6410A>G), V443D (6412T>A 6413T>C), I444L (6414A>T 6416T>G), I453V (6441A>G 6443C>G), H455Y (6447C>T), L456F (6450C>T 6452T>C), S460A (6462T>G 6464G>A), S463A (6471T>G), I470L (6492A>C 6494T>A), T473V (6501A>G 6502C>T 6503A>G), A484C (6534G>T 6535C>G 6536A>T), R488K (6547G>A 6548G>A), I492V (6558A>G 6560C>T), N496H (6570A>C 6572T>C), S499Q (6579A>C 6580G>A 6581C>A), R500H (6582A>C 6583G>A 6584A>T), P501D (6585C>G 6586C>A 6587G>T), I502L (6588A>T 6590T>G), V504I (6594G>A 6596A>C), A506P (6600G>C 6602T>C), S521T (6645T>A 6647T>A), T527N (6664C>A), N529T (6670A>C 6671T>G), V534A (6685T>C 6686G>A), Q535L (6687C>T 6688A>T 6689G>A)
Codon mutations:GCT9AAC (5109G>A 5110C>A 5111T>C), AAT12GAT (5118A>G), GAT13GGG (5122A>G 5123T>G), GGT14TCC (5124G>T 5125G>C 5126T>C), GCA15ACA (5127G>A), GGT17AAC (5133G>A 5134G>A 5135T>C), GTA19GTC (5141A>C), GCT22GTC (5149C>T 5150T>C), AAC23AAT (5153C>T), ACC26GTT (5160A>G 5161C>T 5162C>T), GCA28GCT (5168A>T), CTT29TTG (5169C>T 5171T>G), GAA30GAG (5174A>G), CCG31CCC (5177G>C), GTG32GTA (5180G>A), GCT33GTT (5182C>T), GGG34GGT (5186G>T), GCT35GCC (5189T>C), TCA36GCC (5190T>G 5192A>C), ATA37ATT (5195A>T), GCC38GCG (5198C>G), GCC39GCA (5201C>A), CCA40CCT (5204A>T), CTC41GTA (5205C>G 5207C>A), ACC42GCG (5208A>G 5210C>G), AAC45CAA (5217A>C 5219C>A), ATT47GTA (5223A>G 5225T>A), ATA48ATT (5228A>T), TTA54AAC (5244T>A 5245T>A 5246A>C), GTG57GTA (5255G>A), CAG58CAA (5258G>A), GCT59GCC (5261T>C), CCC60CCT (5264C>T), AAT61GGT (5265A>G 5266A>G), TTC64TTT (5276C>T), ACG65ACA (5279G>A), GTT66GTA (5282T>A), TCA67TCC (5285A>C), CCC68CCT (5288C>T), CGC69AGA (5289C>A 5291C>A), TCG71GCT (5295T>G 5297G>T), CCC72CCA (5300C>A), GGG73GGT (5303G>T), GTC75ATA (5307G>A 5309C>A), TTA77TGG (5314T>G 5315A>G), AAT78AGC (5317A>G 5318T>C), TTG79GCG (5319T>G 5320T>C), GAA80CCC (5322G>C 5323A>C 5324A>C), CCC83CCT (5333C>T), GAA84GAT (5336A>T), CTA85TTG (5337C>T 5339A>G), CCA87CCT (5345A>T), CTA89CTT (5351A>T), GCA90TCC (5352G>T 5354A>C), CAC91CAT (5357C>T), CTC92TTG (5358C>T 5360C>G), TCT93GCC (5361T>G 5363T>C), TAT96TAC (5372T>C), GCG100GCA (5384G>A), GGG102GGT (5390G>T), GTT103TTT (5391G>T), GAG104GAA (5396G>A), CAA106CAG (5402A>G), CTA108ATC (5406C>A 5408A>C), CTG109CTC (5411G>C), GCT110GCG (5414T>G), AAT112AAC (5420T>C), ACA115ACC (5429A>C), GCT116GCC (5432T>C), GGA117GGG (5435A>G), CTG119ATC (5439C>A 5441G>C), GTG120ATA (5442G>A 5444G>A), GCC122GCA (5450C>A), GTT124GTC (5456T>C), CCC125CCA (5459C>A), CCT126CCA (5462T>A), CAT127AAT (5463C>A), TTT128TTC (5468T>C), TTA130ACT (5472T>A 5473T>C 5474A>T), AAT132GGT (5478A>G 5479A>G), ATA133TTG (5481A>T 5483A>G), CCT135CCC (5489T>C), GGC136AGC (5490G>A), ATA138GTC (5496A>G 5498A>C), CCT142CCC (5510T>C), CAT143CAC (5513T>C), GTA144ATA (5514G>A), ATT145ATA (5519T>A), ATT146GTA (5520A>G 5522T>A), ACT150CAA (5532A>C 5533C>A 5534T>A), TTA151TTG (5537A>G), CCA153CCT (5543A>T), GTT154GTG (5546T>G), TTG156ATT (5550T>A 5552G>T), CTT158TTA (5556C>T 5558T>A), CCT159CCC (5561T>C), GTT161GTC (5567T>C), TTT166TAC (5581T>A 5582T>C), CAG170CAA (5594G>A), CAG171TCA (5595C>T 5596A>C 5597G>A), GAA173GAC (5603A>C), CCG174CCC (5606G>C), AGG175ACC (5608G>C 5609G>C), ATG176ATC (5612G>C), AGA177AAA (5614G>A), CTT178TTG (5616C>T 5618T>G), GTA179ATA (5619G>A), CTT182TTG (5628C>T 5630T>G), TAT183TAC (5633T>C), ACT184ACA (5636T>A), CCT185CCA (5639T>A), AGA187AGG (5645A>G), TCT188GCT (5646T>G), GGT190AAT (5652G>A 5653G>A), TCT191GCC (5655T>G 5657T>C), GGT192GGG (5660T>G), GAT193GAC (5663T>C), GTA195GTC (5669A>C), ACT197ACA (5675T>A), GTC198GTT (5678C>T), TCC199TCT (5681C>T), TGC200TGT (5684C>T), AGG201CGA (5685A>C 5687G>A), GTG202GTT (5690G>T), CTT203CTC (5693T>C), ACC204ACG (5696C>G), CGA205AGA (5697C>A), CCT206CCA (5702T>A), CCT208CCC (5708T>C), TTT212TTC (5720T>C), AAT213ATA (5722A>T 5723T>A), TAT214TTT (5725A>T), GTC216GTG (5732C>G), CCC217CCA (5735C>A), CCT218CCC (5738T>C), ACT219ACA (5741T>A), TCT222TCA (5750T>A), AAA223AGA (5752A>G), ACC224ACT (5756C>T), CCC226CCA (5762C>A), ACA228TCT (5766A>T 5768A>T), CTC229GTC (5769C>G), CCT230CCA (5774T>A), ATC231GTT (5775A>G 5777C>T), TTG232TTA (5780G>A), ATA234GTT (5784A>G 5786A>T), GGG235GAG (5788G>A), TTA237ATG (5793T>A 5795A>G), AAC239AAT (5801C>T), TCC240TCA (5804C>A), CCT243CCC (5813T>C), GTA244ATT (5814G>A 5816A>T), ATA246TTG (5820A>T 5822A>G), GAT247GAA (5825T>A), GAG248AAG (5826G>A), CTC249TTG (5829C>T 5831C>G), TAC250TTC (5833A>T), ACC251ACG (5837C>G), AGT252GGC (5838A>G 5840T>C), AAT254AGT (5845A>G), GAG255AGT (5847G>A 5848A>G 5849G>T), AGT256GCC (5850A>G 5851G>C 5852T>C), CTG257TTT (5853C>T 5855G>T), GTG258GTT (5858G>T), GTG259GTT (5861G>T), CCC261CCA (5867C>A), CAG262CAA (5870G>A), GGG264GGC (5876G>C), AGA265AGG (5879A>G), GCA267ACG (5883G>A 5885A>G), CTA268ACT (5886C>A 5887T>C 5888A>T), GGG270GGC (5894G>C), GAG271GTG (5896A>T), CTG272CTC (5900G>C), CAG273CTA (5902A>T 5903G>A), GGC274GGT (5906C>T), ACG275ACT (5909G>T), ACT276ACC (5912T>C), CAG277CAA (5915G>A), CTC278CTG (5918C>G), CTC279TCT (5919C>T 5920T>C 5921C>T), ACG281GTC (5925A>G 5926C>T 5927G>C), GCG282AAC (5928G>A 5929C>A 5930G>C), TCG285ACC (5937T>A 5939G>C), AGG287AGA (5945G>A), GGC288GGG (5948C>G), CGG289GAC (5949C>G 5950G>A 5951G>C), ATC290GTC (5952A>G), AAT291ACC (5956A>C 5957T>C), CAG292CAT (5960G>T), AAG293ATT (5962A>T 5963G>T), GTG294CCA (5964G>C 5965T>C 5966G>A), AGT295GGC (5967A>G 5969T>C), GGG296AGT (5970G>A 5972G>T), GAA297CGT (5973G>C 5974A>G 5975A>T), CAT299_GTT300del (5979_5984delCATGTT), TGG301TAC (5986G>A 5987G>C), AAT302ACA (5989A>C 5990T>A), CAG304AAT (5994C>A 5996G>T), GTC305TTG (5997G>T 5999C>G), ACC306GCC (6000A>G), AAC307TCC (6003A>T 6004A>C), ATC308CAA (6006A>C 6007T>A 6008C>A), AAC309AAT (6011C>T), GGG310TGG (6012G>T), ACC311AAC (6016C>A), CCT312AGT (6018C>A 6019C>G), TTT313TAC (6022T>A 6023T>C), GAG317GAA (6035G>A), GAT318GAA (6038T>A), GTC319ATC (6039G>A), CCG320CCA (6044G>A), GCT321GCC (6047T>C), GGC324GGA (6056C>A), TCT329GTG (6069T>G 6070C>T 6071T>G), GGC330GGG (6074C>G), CTC332ATT (6078C>A 6080C>T), TTT333CAA (6081T>C 6082T>A 6083T>A), GTA335GTG (6089A>G), CTA336CTC (6092A>C), AGC337ACC (6094G>C), CAG338CAA (6098G>A), AGA339ACC (6100G>C 6101A>C), GAC340ACA (6102G>A 6103A>C 6104C>A), CAT341AGG (6105C>A 6106A>G 6107T>G), GAT342ACA (6108G>A 6109A>C 6110T>A), GCC344GGC (6115C>G), TGC345TCG (6118G>C 6119C>G), TGC345_AGG346insACC (6119_6120insACC), AGG346CGC (6120A>C 6122G>C), AGT347GGC (6123A>G 6125T>C), CAT348CAC (6128T>C), GAT349AAA (6129G>A 6131T>A), GCA350GCT (6134A>T), GTA351ACA (6135G>A 6136T>C), ATT352GTG (6138A>G 6140T>G), GCA353TAC (6141G>T 6142C>A 6143A>C), ACC354ACT (6146C>T), AAC355GGG (6147A>G 6148A>G 6149C>G), TCT356AGC (6150T>A 6151C>G 6152T>C), AAA358GAC (6156A>G 6158A>C), ACC360TCT (6162A>T 6164C>T), TTG363CTG (6171T>C), GGC364GGT (6176C>T), GCT365AGA (6177G>A 6178C>G 6179T>A), ATA366GTT (6180A>G 6182A>T), ATT368TTT (6186A>T), GGC369GCC (6190G>C), ACA370ACT (6194A>T), TGG371GAC (6195T>G 6196G>A 6197G>C), GAA372ACA (6198G>A 6199A>C), GAA373GAC (6203A>C), GAC374AAT (6204G>A 6206C>T), GTG376TTT (6210G>T 6212G>T), CAC377GAA (6213C>G 6215C>A), ATC378ACT (6217T>C 6218C>T), CCT381AAC (6225C>A 6226C>A 6227T>C), ACT382ACA (6230T>A), TTT384TTC (6236T>C), ACT385ACC (6239T>C), GTT387GTC (6245T>C), GGC388GGT (6248C>T), TTG389GTT (6249T>G 6251G>T), TTT390ATC (6252T>A 6254T>C), GAA391CAG (6255G>C 6257A>G), GGA393GGT (6263A>T), GGT394AGT (6264G>A), TTC395ACC (6267T>A 6268T>C), AAC396ACC (6271A>C), AAC396_CAG397insCCCCGAAATGAACCCCAA (6272_6273insCCCCGAAATGAACCCCAA), CAG397CAA (6275G>A), ACA399GTG (6279A>G 6280C>T 6281A>G), CCC401CCA (6287C>A), AAT402AGT (6289A>G), TAT403TAC (6293T>C), TCT404TCA (6296T>A), GGA405GGC (6299A>C), GCC406AGA (6300G>A 6301C>G 6302C>A), TTA407AAC (6303T>A 6304T>A 6305A>C), ACA408ATT (6307C>T 6308A>T), CTT409CAT (6310T>A), ATG411GTG (6315A>G), GGA412CAC (6318G>C 6319G>A 6320A>C), TTG413CTG (6321T>C), CCT415CCC (6329T>C), CCT416GCT (6330C>G), GTG417GTA (6335G>A), ACC420ACT (6344C>T), CCT422CCG (6350T>G), GGT423GGC (6353T>C), GAA424GAG (6356A>G), CAA425CAG (6359A>G), ATT426CTC (6360A>C 6362T>C), CTT427CTC (6365T>C), TTT429TTC (6371T>C), TCC431TCT (6377C>T), CAC432ACT (6378C>A 6379A>C 6380C>T), ATT433ATG (6383T>G), CCT434CCC (6386T>C), CTT435GGA (6387C>G 6388T>G 6389T>A), AAA436TGC (6390A>T 6391A>G 6392A>C), GGA437AGC (6393G>A 6395A>C), GGT438GGG (6398T>G), GTG439TAC (6399G>T 6400T>A 6401G>C), GCG440CCC (6402G>C 6404G>C), GAC441AAC (6405G>A), CCA442ATG (6408C>A 6409C>T 6410A>G), GTT443GAC (6412T>A 6413T>C), ATT444TTG (6414A>T 6416T>G), GAT445GAC (6419T>C), CTC447CTG (6425C>G), TTG448CTC (6426T>C 6428G>C), CCT449CCC (6431T>C), CAA450CAG (6434A>G), ATC453GTG (6441A>G 6443C>G), CAT455TAT (6447C>T), CTT456TTC (6450C>T 6452T>C), CAA458CAG (6458A>G), TCG460GCA (6462T>G 6464G>A), CCC462CCA (6470C>A), TCA463GCA (6471T>G), TCA465TCT (6479A>T), GTA467GTG (6485A>G), GCA468GCT (6488A>T), ATT470CTA (6492A>C 6494T>A), AGG471AGA (6497G>A), ACA473GTG (6501A>G 6502C>T 6503A>G), CCA475CCG (6509A>G), GGA478GGT (6518A>T), CGT479AGG (6519C>A 6521T>G), CTA481TTG (6525C>T 6527A>G), GAA483GAG (6533A>G), GCA484TGT (6534G>T 6535C>G 6536A>T), AAA485AAG (6539A>G), TTA486CTT (6540T>C 6542A>T), CAC487CAT (6545C>T), AGG488AAA (6547G>A 6548G>A), AGT489TCA (6549A>T 6550G>C 6551T>A), GGT490GGC (6554T>C), TAC491TAT (6557C>T), ATC492GTT (6558A>G 6560C>T), GCC495GCT (6569C>T), AAT496CAC (6570A>C 6572T>C), GGT498GGC (6578T>C), AGC499CAA (6579A>C 6580G>A 6581C>A), AGA500CAT (6582A>C 6583G>A 6584A>T), CCG501GAT (6585C>G 6586C>A 6587G>T), ATT502TTG (6588A>T 6590T>G), GTG503GTT (6593G>T), GTA504ATC (6594G>A 6596A>C), CCA505CCC (6599A>C), GCT506CCC (6600G>C 6602T>C), TAC509TAT (6611C>T), TTC510TTT (6614C>T), AGG511AGA (6617G>A), GAC513GAT (6623C>T), TCT514TCC (6626T>C), GTT516GTC (6632T>C), AAT517AAC (6635T>C), CAA518CAG (6638A>G), TAT520TAC (6644T>C), TCT521ACA (6645T>A 6647T>A), ACT527AAT (6664C>A), GGA528GGG (6668A>G), AAT529ACG (6670A>C 6671T>G), CGC531CGT (6677C>T), AGG533CGT (6681A>C 6683G>T), GTG534GCA (6685T>C 6686G>A), CAG535TTA (6687C>T 6688A>T 6689G>A)
1260100%98359.1%258 (95.2%)152 (56.1%)11/2/0/01
Protein mutations:I6F (6707A>T 6709A>T), G11S (6722G>T 6723G>C), I13V (6728A>G 6730A>C), V14L (6731G>C 6733C>T), T15G (6734A>G 6735C>G), N16S (6737A>T 6738A>C), I18L (6743A>C), V22I (6755G>A 6757G>C), N27G (6770A>G 6771A>G 6772T>G), D34E (6793C>A), K39R (6807A>G 6808G>A), Q40K (6809C>A), Q40_L41insLQQASFQFSSN (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT), N47Q (6830A>C 6832C>A), V57I (6860G>A 6862C>T), Q58E (6863C>G), Q62K (6875C>A), A65Q (6884G>C 6885C>A 6886T>G), D66E (6889T>A), I68M (6895T>G), A69R (6896G>A 6897C>G), I70V (6899A>G 6901C>T), R71K (6903G>A), G73A (6909G>C 6910G>A), V74M (6911G>A), T76L (6917A>C 6918C>T 6919C>A), A77E (6921C>A), P82E (6935C>G 6936C>A 6937C>G), V90I (6959G>A 6961T>C), Q96K (6977C>A 6979G>A), V97T (6980G>A 6981T>C), N101S (6993A>G 6994T>C), G109D (7017G>A 7018A>T), T111R (7023C>G), K112T (7026A>C 7027A>T), T115Y (7034A>T 7035C>A), F116N (7037T>A 7038T>A 7039C>T), S117A (7040T>G 7042C>A), G119R (7046G>C 7048A>C), T121S (7052A>T), N122T (7056A>C 7057T>C), V123P (7058G>C 7059T>C 7060T>C), S124Q (7061T>C 7062C>A 7063T>A), H125P (7065A>C 7066T>C), A126S (7067G>T 7069C>G), R127G (7070A>G 7072A>G), T128A (7073A>G 7075T>A), V129L (7076G>C 7078C>A), D130P (7079G>C 7080A>C 7081C>A), L131G (7082C>G 7083T>G 7084G>A), T132R (7086C>G 7087C>A), K133A (7088A>G 7089A>C 7090G>T), K134N (7093G>T), T135L (7094A>C 7095C>T 7096A>T), S136R (7097T>A 7098C>G 7099A>G), P139V (7106C>G 7107C>T 7108A>C), A140P (7109G>C 7111T>C), P141A (7112C>G 7114T>C), A142R (7115G>C 7116C>G), P143G (7118C>G 7119C>G), V144S (7121G>T 7122T>C 7123T>C), R146S (7129A>C), P147T (7130C>A 7132T>G), S148F (7133A>T 7134G>T), V150N (7139G>A 7140T>A), A151S (7142G>T 7144C>T), T153I (7149C>T 7150A>T), V154A (7152T>C 7153C>T), S155T (7154T>A 7156C>T), T156S (7157A>T 7159C>T), R157V (7160C>G 7161G>T 7162C>G), S158Y (7164C>A 7165A>T), T159S (7166A>T 7168C>A), L160N (7169T>A 7170T>A 7171G>T), I161Q (7172A>C 7173T>A 7174T>A), S162T (7176G>C), G163T (7178G>A 7179G>C 7180G>C), S165T (7184T>A 7186C>G), N166R (7188A>G 7189T>A), P167L (7191C>T), S168G (7193T>G 7194C>G), L170T (7199T>A 7200T>C), R172G (7205A>G 7207G>T), S174G (7211T>G 7212C>G), S175T (7214T>A 7216T>C), Q180L (7230A>T 7231A>C), T182_S183del (7235_7240delACCTCC), S185T (7244T>A), S186A (7247T>G 7249T>A), S189R (7258T>G), E190S (7259G>A 7260A>G 7261G>C), R193E (7268C>G 7269G>A 7270C>G), S194D (7271A>G 7272G>A 7273C>T), A198N (7283G>A 7284C>A 7285A>T), E200S (7289G>T 7290A>C 7291G>A), Y202F (7296A>T), L207H (7311T>A 7312A>T), R208N (7313C>A 7314G>A), T209I (7317C>T 7318A>C), A210S (7319G>T 7321C>G), Y211F (7323A>T), A219S (7346G>T 7348T>C), N222Q (7355A>C 7357T>A), S238G (7403T>G 7404C>G 7405T>C), H243R (7419A>G), L251I (7442C>A 7444C>T), R253K (7448C>A 7449G>A), Q258R (7464A>G 7465A>G)
Codon mutations:TTT5TTC (6706T>C), ATA6TTT (6707A>T 6709A>T), GCG7GCT (6712G>T), GGG8GGA (6715G>A), CTT9TTG (6716C>T 6718T>G), GCT10GCA (6721T>A), GGT11TCT (6722G>T 6723G>C), ATA13GTC (6728A>G 6730A>C), GTC14CTT (6731G>C 6733C>T), ACC15GGC (6734A>G 6735C>G), AAT16TCT (6737A>T 6738A>C), GGC17GGA (6742C>A), ATT18CTT (6743A>C), GGC19GGT (6748C>T), TCA20TCC (6751A>C), CTT21CTA (6754T>A), GTG22ATC (6755G>A 6757G>C), AAC23AAT (6760C>T), AAT27GGG (6770A>G 6771A>G 6772T>G), GCA28GCC (6775A>C), ATA29ATC (6778A>C), GTA33GTT (6790A>T), GAC34GAA (6793C>A), AAC37AAT (6802C>T), AAG39AGA (6807A>G 6808G>A), CAA40AAA (6809C>A), CAA40_CTA41insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT), CAG42CAA (6817G>A), TCT45TCC (6826T>C), TTC46TTT (6829C>T), AAC47CAA (6830A>C 6832C>A), GAT49GAC (6838T>C), CTG53CTC (6850G>C), GCT55GCA (6856T>A), GTC57ATT (6860G>A 6862C>T), CAG58GAG (6863C>G), CAG62AAG (6875C>A), CTG63TTG (6878C>T), CAG64CAA (6883G>A), GCT65CAG (6884G>C 6885C>A 6886T>G), GAT66GAA (6889T>A), ATT68ATG (6895T>G), GCA69AGA (6896G>A 6897C>G), ATC70GTT (6899A>G 6901C>T), AGA71AAA (6903G>A), GGG73GCA (6909G>C 6910G>A), GTG74ATG (6911G>A), TTG75CTC (6914T>C 6916G>C), ACC76CTA (6917A>C 6918C>T 6919C>A), GCG77GAG (6921C>A), GGC78GGT (6925C>T), GGC79GGA (6928C>A), TCC81TCT (6934C>T), CCC82GAG (6935C>G 6936C>A 6937C>G), ACT83ACA (6940T>A), GCA86GCC (6949A>C), AGA87CGT (6950A>C 6952A>T), GTT90ATC (6959G>A 6961T>C), AAT91AAC (6964T>C), GCA92GCC (6967A>C), CCT93CCC (6970T>C), ACT95ACA (6976T>A), CAG96AAA (6977C>A 6979G>A), GTT97ACT (6980G>A 6981T>C), TTA98TTG (6985A>G), AAT101AGC (6993A>G 6994T>C), ACC103ACA (7000C>A), AGA104AGG (7003A>G), TAT105TAC (7006T>C), GCC107GCT (7012C>T), GGA109GAT (7017G>A 7018A>T), GCC110GCT (7021C>T), ACG111AGG (7023C>G), AAA112ACT (7026A>C 7027A>T), ACC113ACA (7030C>A), ACT114ACA (7033T>A), ACT115TAT (7034A>T 7035C>A), TTC116AAT (7037T>A 7038T>A 7039C>T), TCC117GCA (7040T>G 7042C>A), GGT118GGC (7045T>C), GGA119CGC (7046G>C 7048A>C), TTC120TTT (7051C>T), ACC121TCC (7052A>T), AAT122ACC (7056A>C 7057T>C), GTT123CCC (7058G>C 7059T>C 7060T>C), TCT124CAA (7061T>C 7062C>A 7063T>A), CAT125CCC (7065A>C 7066T>C), GCC126TCG (7067G>T 7069C>G), AGA127GGG (7070A>G 7072A>G), ACT128GCA (7073A>G 7075T>A), GTC129CTA (7076G>C 7078C>A), GAC130CCA (7079G>C 7080A>C 7081C>A), CTG131GGA (7082C>G 7083T>G 7084G>A), ACC132AGA (7086C>G 7087C>A), AAG133GCT (7088A>G 7089A>C 7090G>T), AAG134AAT (7093G>T), ACA135CTT (7094A>C 7095C>T 7096A>T), TCA136AGG (7097T>A 7098C>G 7099A>G), GCC137GCT (7102C>T), ACA138ACT (7105A>T), CCA139GTC (7106C>G 7107C>T 7108A>C), GCT140CCC (7109G>C 7111T>C), CCT141GCC (7112C>G 7114T>C), GCG142CGG (7115G>C 7116C>G), CCT143GGT (7118C>G 7119C>G), GTT144TCC (7121G>T 7122T>C 7123T>C), AGA146AGC (7129A>C), CCT147ACG (7130C>A 7132T>G), AGC148TTC (7133A>T 7134G>T), GTC150AAC (7139G>A 7140T>A), GCC151TCT (7142G>T 7144C>T), ACA153ATT (7149C>T 7150A>T), GTC154GCT (7152T>C 7153C>T), TCC155ACT (7154T>A 7156C>T), ACC156TCT (7157A>T 7159C>T), CGC157GTG (7160C>G 7161G>T 7162C>G), TCA158TAT (7164C>A 7165A>T), ACC159TCA (7166A>T 7168C>A), TTG160AAT (7169T>A 7170T>A 7171G>T), ATT161CAA (7172A>C 7173T>A 7174T>A), AGC162ACC (7176G>C), GGG163ACC (7178G>A 7179G>C 7180G>C), TCT164TCA (7183T>A), TCC165ACG (7184T>A 7186C>G), AAT166AGA (7188A>G 7189T>A), CCT167CTT (7191C>T), TCT168GGT (7193T>G 7194C>G), TTA170ACA (7199T>A 7200T>C), AGG172GGT (7205A>G 7207G>T), AGT173TCT (7208A>T 7209G>C), TCT174GGT (7211T>G 7212C>G), TCT175ACC (7214T>A 7216T>C), GTT177GTC (7222T>C), TCT178TCG (7225T>G), TCT179AGC (7226T>A 7227C>G 7228T>C), CAA180CTC (7230A>T 7231A>C), CCC181CCG (7234C>G), ACC182_TCC183del (7235_7240delACCTCC), TCC184TCA (7243C>A), TCT185ACT (7244T>A), TCT186GCA (7247T>G 7249T>A), CGG187AGG (7250C>A), ACC188ACT (7255C>T), AGT189AGG (7258T>G), GAG190AGC (7259G>A 7260A>G 7261G>C), GTG192GTT (7267G>T), CGC193GAG (7268C>G 7269G>A 7270C>G), AGC194GAT (7271A>G 7272G>A 7273C>T), AAC196AAT (7279C>T), GCA198AAT (7283G>A 7284C>A 7285A>T), CTG199TTG (7286C>T), GAG200TCA (7289G>T 7290A>C 7291G>A), TAC202TTC (7296A>T), GGA205GGG (7306A>G), GCG206GCC (7309G>C), CTA207CAT (7311T>A 7312A>T), CGC208AAC (7313C>A 7314G>A), ACA209ATC (7317C>T 7318A>C), GCC210TCG (7319G>T 7321C>G), TAT211TTT (7323A>T), GTG212GTC (7327G>C), ACG213ACC (7330G>C), CCT214CCA (7333T>A), CCC215CCA (7336C>A), AGT217AGC (7342T>C), GCT219TCC (7346G>T 7348T>C), AGT221AGC (7354T>C), AAT222CAA (7355A>C 7357T>A), CCA229CCC (7378A>C), GAG231GAA (7384G>A), ACA237ACT (7402A>T), TCT238GGC (7403T>G 7404C>G 7405T>C), GCA239GCT (7408A>T), TTT240TTC (7411T>C), ACC242ACG (7417C>G), CAC243CGC (7419A>G), AGA244AGG (7423A>G), CAA245CAG (7426A>G), CCG246CCT (7429G>T), CTA247CTC (7432A>C), CAT250CAC (7441T>C), CTC251ATT (7442C>A 7444C>T), CGT252CGC (7447T>C), CGG253AAG (7448C>A 7449G>A), AGA254CGA (7451A>C), CAA258CGG (7464A>G 7465A>G), GTT259GTG (7468T>G), TAG260TAA (7471G>A)
Proteins
4170099.8%1134196.2%1697 (100%)1622 (95.6%)0/0/0/01
Protein mutations:A13V (42C>T), N15D (47A>G), M28V (86A>G), I52K (159T>A), K67N (205G>T), P79I (239C>A 240C>T), E94D (286G>C), T96S (290A>T), G102E (309G>A 310T>A), T104S (314A>T 316C>T), K163R (492A>G), T167A (503A>G), F172Y (519T>A 520T>C), R189K (570G>A), R190K (573G>A), H192S (578C>T 579A>C), S195T (587T>A), C221S (665T>A), L251I (755T>A 757G>A), L277I (833T>A 835G>A), I342V (1028A>G 1030A>G), R394K (1185G>A 1186A>G), M402I (1210G>A), A423T (1271G>A), V491L (1475G>T), K496R (1491A>G), L508V (1526T>G), K511R (1536A>G), A586V (1761C>T), D618E (1858T>A), P642S (1928C>T), M650A (1952A>G 1953T>C 1954G>A), Y693F (2082A>T 2083C>T), T699A (2099A>G 2101C>T), P700L (2103C>T), R744K (2235G>A), I750V (2252A>G), S754K (2265G>A 2266T>G), G760S (2282G>A), M765I (2299G>A), D773N (2321G>A), V779I (2339G>A 2341T>C), N781S (2346A>G), T783A (2351A>G 2353T>C), I809V (2429A>G 2431T>C), V830A (2493T>C), D846N (2540G>A 2542T>C), A851T (2555G>A 2557T>C), D863E (2593C>G), V867I (2603G>A), S883T (2651T>A), N913S (2742A>G 2743C>T), R1004K (3015G>A), N1006S (3021A>G), Q1045K (3137C>A), S1051P (3155T>C), I1057V (3173A>G), P1098S (3296C>T 3298A>C), I1160V (3482A>G 3484A>G), K1210T (3633A>C 3634G>A), P1224S (3674C>T), D1254E (3766C>G), Q1291E (3875C>G 3877A>G), G1352A (4059G>C), E1393D (4183G>T), V1404I (4214G>A 4216C>T), K1425T (4278A>C), N1459H (4379A>C 4381T>C), K1463V (4391A>G 4392A>T 4393G>A), M1474V (4424A>G), K1480T (4443A>C), I1520T (4563T>C 4564T>C), K1552R (4659A>G 4660G>A), D1575N (4727G>A), E1613G (4842A>G)
Codon mutations:TCT5TCG (19T>G), GCT13GTT (42C>T), AAC15GAC (47A>G), ATG28GTG (86A>G), AGT31AGC (97T>C), ACA35ACT (109A>T), GCA42GCG (130A>G), ATA52AAA (159T>A), CCC60CCT (184C>T), ACC61ACT (187C>T), GTC65GTT (199C>T), AAG67AAT (205G>T), ATC68ATT (208C>T), CCT69CCC (211T>C), CCT71CCC (217T>C), GGG75GGA (229G>A), CCA79ATA (239C>A 240C>T), TAC83TAT (253C>T), AGC84AGT (256C>T), GGC88GGT (268C>T), GAG94GAC (286G>C), ACC96TCC (290A>T), ACT97ACC (295T>C), CAG100CAA (304G>A), GGT102GAA (309G>A 310T>A), ACC104TCT (314A>T 316C>T), GCG107GCC (325G>C), GTT110GTC (334T>C), CCC111CCT (337C>T), CAA115CAG (349A>G), AGG119AGA (361G>A), GAC120GAT (364C>T), GCC121GCT (367C>T), GAG123GAA (373G>A), CTA125CTT (379A>T), ATC129ATT (391C>T), GAG136GAA (412G>A), TAC140TAT (424C>T), GAA145GAG (439A>G), CTT150CTA (454T>A), CCG156CCA (472G>A), GCC162GCT (490C>T), AAG163AGG (492A>G), GAA165GAG (499A>G), ACA167GCA (503A>G), TCT170TCC (514T>C), CTG171TTG (515C>T), TTT172TAC (519T>A 520T>C), CCA175CCT (529A>T), TAT177TAC (535T>C), ACA178ACT (538A>T), CCA179CCT (541A>T), TAT181TAC (547T>C), CCG185CCA (559G>A), AGG189AAG (570G>A), AGA190AAA (573G>A), CTG191TTA (575C>T 577G>A), CAC192TCC (578C>T 579A>C), GAG194GAA (586G>A), TCG195ACG (587T>A), TTT196TTC (592T>C), GAT202GAC (610T>C), TGC205TGT (619C>T), TTC208TTT (628C>T), TGT210TGC (634T>C), AAC216AAT (652C>T), TTG220CTG (662T>C), TGC221AGC (665T>A), AGG227AGA (685G>A), ACC245ACT (739C>T), AAG250AAA (754G>A), TTG251ATA (755T>A 757G>A), TTG259CTG (779T>C), TGC260TGT (784C>T), GCG261GCT (787G>T), CTA262CTG (790A>G), TCT263TCC (793T>C), CTA265CTG (799A>G), ACT267ACC (805T>C), AGG268AGA (808G>A), ATC270ATA (814C>A), GAC272GAT (820C>T), GGA275GGG (829A>G), TTG277ATA (833T>A 835G>A), CTC280CTT (844C>T), CTT283CTC (853T>C), TTG286TTA (862G>A), GCT287GCC (865T>C), GGC295GGT (889C>T), GAA298GAG (898A>G), TCT299TCC (901T>C), TTG300CTG (902T>C), ATT301ATA (907T>A), GAG305GAA (919G>A), ATC320ATT (964C>T), CCT322CCC (970T>C), CTA324CTT (976A>T), CTG329CTA (991G>A), CAG330CAA (994G>A), GGG331GGA (997G>A), CCC332CCT (1000C>T), GTG337GTT (1015G>T), GAA338GAG (1018A>G), GTT340GTC (1024T>C), CCA341CCC (1027A>C), ATA342GTG (1028A>G 1030A>G), GGG346GGA (1042G>A), GGG352GGA (1060G>A), ATC358ATT (1078C>T), GCA366GCG (1102A>G), TCC367TCT (1105C>T), TTA369TTG (1111A>G), TAC378TAT (1138C>T), GGA379GGG (1141A>G), CTG380CTA (1144G>A), GAA381GAG (1147A>G), TTA383CTA (1151T>C), AAA384AAG (1156A>G), CCA392CCG (1180A>G), AGA394AAG (1185G>A 1186A>G), GAG395GAA (1189G>A), GAA396GAG (1192A>G), ATG402ATA (1210G>A), TCC405TCT (1219C>T), GCG409GCA (1231G>A), GTG410GTC (1234G>C), TTG411CTG (1235T>C), CAC420CAT (1264C>T), ACT422ACC (1270T>C), GCC423ACC (1271G>A), CTC424TTG (1274C>T 1276C>G), AGC430AGT (1294C>T), ACT437ACA (1315T>A), CTC440CTT (1324C>T), AGA446AGG (1342A>G), AAG447AAA (1345G>A), CTT448CTC (1348T>C), TCG449TCA (1351G>A), GCT453GCC (1363T>C), CCT455CCC (1369T>C), GAT456GAC (1372T>C), GCT463GCC (1393T>C), GCC469GCT (1411C>T), GCT470GCC (1414T>C), CGC472CGT (1420C>T), TCC473TCT (1423C>T), CAT476CAC (1432T>C), CGG477CGA (1435G>A), AAA479AAG (1441A>G), CTC482CTT (1450C>T), GTT489GTG (1471T>G), GTT490GTG (1474T>G), GTG491TTG (1475G>T), GGT495GGC (1489T>C), AAG496AGG (1491A>G), GGG498GGA (1498G>A), AAA501AAG (1507A>G), CTT504CTC (1516T>C), GCC505GCT (1519C>T), TTG508GTG (1526T>G), GCC509GCT (1531C>T), AAA511AGA (1536A>G), GCT514GCC (1546T>C), TCT515TCC (1549T>C), CTC516CTT (1552C>T), GGG518GGA (1558G>A), GGT523GGC (1573T>C), CTT524CTC (1576T>C), CCG526CCA (1582G>A), GGT529GGC (1591T>C), GTT530GTC (1594T>C), GAT531GAC (1597T>C), CAC532CAT (1600C>T), GAC534GAT (1606C>T), GCA535GCG (1609A>G), TAT536TAC (1612T>C), GGA538GGG (1618A>G), GAA539GAG (1621A>G), AGA540AGG (1624A>G), GTT542GTC (1630T>C), GAC546GAT (1642C>T), AGT550AGC (1654T>C), CCC552CCT (1660C>T), ATC553ATT (1663C>T), GAC555GAT (1669C>T), TTA559CTG (1679T>C 1681A>G), CTT562CTC (1690T>C), ACC565ACT (1699C>T), ACG569ACT (1711G>T), AAT571AAC (1717T>C), GAT573GAC (1723T>C), ATT575ATC (1729T>C), GAG576GAA (1732G>A), AGT584AGC (1756T>C), GCC586GTC (1761C>T), ATA587ATC (1765A>C), ATC588ATT (1768C>T), AAC592AAT (1780C>T), GCA597GCG (1795A>G), AAT603AAC (1813T>C), CGT610CGC (1834T>C), GAT618GAA (1858T>A), GAG623GAA (1873G>A), AAA626AAG (1882A>G), GAT628GAC (1888T>C), GGT631GGC (1897T>C), CAA632CAG (1900A>G), CCT642TCT (1928C>T), GAC643GAT (1933C>T), TCG645TCA (1939G>A), CTG649CTA (1951G>A), ATG650GCA (1952A>G 1953T>C 1954G>A), GCT652GCC (1960T>C), CCG653CCA (1963G>A), GGC656GGT (1972C>T), GGA661GGG (1987A>G), CAT665CAC (1999T>C), GGG666GGA (2002G>A), AAA667AAG (2005A>G), GTC669GTT (2011C>T), AAA671AAG (2017A>G), ACC672ACT (2020C>T), ACT674ACC (2026T>C), GGT676GGC (2032T>C), CTC678CTT (2038C>T), ATC679ATT (2041C>T), GCT680GCC (2044T>C), CGA681CGG (2047A>G), CTA685TTA (2057C>T), GAG692GAA (2080G>A), TAC693TTT (2082A>T 2083C>T), GAG694GAA (2086G>A), TTA695CTG (2087T>C 2089A>G), ACC699GCT (2099A>G 2101C>T), CCC700CTC (2103C>T), ACT701ACC (2107T>C), AAC704AAT (2116C>T), TTT705TTC (2119T>C), GAC706GAT (2122C>T), AAC708AAT (2128C>T), GCG712GCC (2140G>C), TTC713TTT (2143C>T), AAC720AAT (2164C>T), AAG721AAA (2167G>A), TAC722TAT (2170C>T), GGG723GGA (2173G>A), GTC730GTT (2194C>T), GGA731GGG (2197A>G), AGG738AGA (2218G>A), GAG742GAA (2230G>A), AGA744AAA (2235G>A), AAC749AAT (2251C>T), ATC750GTC (2252A>G), AGT754AAG (2265G>A 2266T>G), CAG756CAA (2272G>A), GGT760AGT (2282G>A), GGC761GGT (2287C>T), TAT764TAC (2296T>C), ATG765ATA (2299G>A), GGT772GGC (2320T>C), GAT773AAT (2321G>A), GTT779ATC (2339G>A 2341T>C), CAG780CAA (2344G>A), AAC781AGC (2346A>G), ACT783GCC (2351A>G 2353T>C), GAA789GAG (2371A>G), GCC791GCT (2377C>T), GGC792GGT (2380C>T), CTA794CTG (2386A>G), CTT797TTG (2393C>T 2395T>G), TGT799TGC (2401T>C), AGG801AGA (2407G>A), ATT802ATC (2410T>C), TAT804TAC (2416T>C), TGC808TGT (2428C>T), ATT809GTC (2429A>G 2431T>C), ATC817ATT (2455C>T), GGA821GGG (2467A>G), GTC830GCC (2493T>C), CTT838CTA (2518T>A), CAG843CAA (2533G>A), GAT846AAC (2540G>A 2542T>C), GCT851ACC (2555G>A 2557T>C), GAT854GAC (2566T>C), CCC859CCT (2581C>T), GAT861GAC (2587T>C), GAC863GAG (2593C>G), TTC865TTT (2599C>T), GTT866GTC (2602T>C), GTT867ATT (2603G>A), ACC874ACT (2626C>T), GGC876GGT (2632C>T), GGA879GGG (2641A>G), TCT883ACT (2651T>A), CGT885CGC (2659T>C), GGT886GGC (2662T>C), TTC892TTT (2680C>T), GAG900GAA (2704G>A), AAA906AAG (2722A>G), AGA907AGG (2725A>G), ATC908ATT (2728C>T), AGA912AGG (2740A>G), AAC913AGT (2742A>G 2743C>T), TCT917TCC (2755T>C), GAG919GAA (2761G>A), GAA920GAG (2764A>G), AGA925AGG (2779A>G), GAT926GAC (2782T>C), AAG927AAA (2785G>A), TAT928TAC (2788T>C), ATC934ATT (2806C>T), ACC938ACT (2818C>T), GAA939GAG (2821A>G), GAG940GAA (2824G>A), GAA945GAG (2839A>G), GAA946GAG (2842A>G), CGA951CGG (2857A>G), ATT954ATC (2866T>C), AAG960AAA (2884G>A), AAA963AAG (2893A>G), GAG965GAA (2899G>A), AGG966AGA (2902G>A), GGC970GGT (2914C>T), TTG971CTG (2915T>C), GGT974GGC (2926T>C), ATC977ATT (2935C>T), AAG979AAA (2941G>A), AGG980AGA (2944G>A), GAC983GAT (2953C>T), AAG986AAA (2962G>A), CCT987CCC (2965T>C), GGA989GGG (2971A>G), AAG990AAA (2974G>A), CTG991TTG (2975C>T), GAT994GAC (2986T>C), GAC995GAT (2989C>T), GTT999GTG (3001T>G), AGA1004AAA (3015G>A), AAT1006AGT (3021A>G), GAA1008GAG (3028A>G), ATT1013ATC (3043T>C), AGG1016AGA (3052G>A), GGT1023GGC (3073T>C), GGT1025GGA (3079T>A), GTT1028GTC (3088T>C), AGC1031AGT (3097C>T), ACT1037ACC (3115T>C), CAG1045AAG (3137C>A), GGG1049GGA (3151G>A), GTT1050GTC (3154T>C), TCC1051CCC (3155T>C), AAG1053AAA (3163G>A), ATT1055ATA (3169T>A), ATA1057GTA (3173A>G), AAA1059AAG (3181A>G), TCG1060TCA (3184G>A), GGT1061GGC (3187T>C), GAA1062GAG (3190A>G), AGG1067AGA (3205G>A), TTT1068TTC (3208T>C), AGA1073AGG (3223A>G), ACA1077ACG (3235A>G), CTA1081TTA (3245C>T), GGT1084GGC (3256T>C), GCG1085GCA (3259G>A), CCC1086CCT (3262C>T), GAA1087GAG (3265A>G), GGG1088GGC (3268G>C), ACC1089ACT (3271C>T), TTA1093CTA (3281T>C), AAG1096AAA (3292G>A), AGA1097AGG (3295A>G), CCA1098TCC (3296C>T 3298A>C), GGA1100GGG (3304A>G), TTG1105CTA (3317T>C 3319G>A), GCC1107GCT (3325C>T), AGA1108AGG (3328A>G), GGA1110GGG (3334A>G), GCA1113GCG (3343A>G), ATA1117ATC (3355A>C), GGG1123GGA (3373G>A), GGT1124GGC (3376T>C), CAA1125CAG (3379A>G), CTC1129CTT (3391C>T), CTA1130CTG (3394A>G), TCT1133TCC (3403T>C), AGT1137AGC (3415T>C), GGC1141GGT (3427C>T), ACC1142ACT (3430C>T), GAC1146GAT (3442C>T), TGT1149TGC (3451T>C), TAC1151TAT (3457C>T), ATT1152ATC (3460T>C), GGG1156GGT (3472G>T), TAC1159TAT (3481C>T), ATA1160GTG (3482A>G 3484A>G), GGA1163GGG (3493A>G), GCT1168GCC (3508T>C), GCC1169GCA (3511C>A), GGA1171GGG (3517A>G), GGA1172GGG (3520A>G), AGC1182AGT (3550C>T), GAG1183GAA (3553G>A), GGG1184GGA (3556G>A), GAA1185GAG (3559A>G), GCC1186GCT (3562C>T), GGC1190GGT (3574C>T), GGA1195GGG (3589A>G), ACC1196ACA (3592C>A), TGC1198TGT (3598C>T), TTA1203CTA (3611T>C), GGT1204GGC (3616T>C), AAG1210ACA (3633A>C 3634G>A), CTC1211CTT (3637C>T), AAG1214AAA (3646G>A), ACT1215ACC (3649T>C), AAG1216AAA (3652G>A), TTT1217TTC (3655T>C), TCA1220TCG (3664A>G), CCA1224TCA (3674C>T), GGT1228GGC (3688T>C), GGC1236GGT (3712C>T), CCC1240CCT (3724C>T), AGA1241AGG (3727A>G), AAG1243AAA (3733G>A), CCC1246CCT (3742C>T), TTG1248CTG (3746T>C), CAA1249CAG (3751A>G), GTT1251GTC (3757T>C), GAC1254GAG (3766C>G), CTG1256TTG (3770C>T), AAA1257AAG (3775A>G), ACT1260ACA (3784T>A), AAA1265AAG (3799A>G), GTG1271GTA (3817G>A), GAG1273GAA (3823G>A), AAA1277AAG (3835A>G), GTT1282GTC (3850T>C), GAA1284GAG (3856A>G), GAC1288GAT (3868C>T), CAA1291GAG (3875C>G 3877A>G), TCA1294TCG (3886A>G), GCG1296GCA (3892G>A), CAG1297CAA (3895G>A), GCA1298GCT (3898A>T), GCA1300GCG (3904A>G), CTC1302CTT (3910C>T), AGC1308AGT (3928C>T), GGC1309GGT (3931C>T), CAC1310CAT (3934C>T), AAG1316AAA (3952G>A), AAA1328AAG (3988A>G), TTG1329CTG (3989T>C), GCT1336GCC (4012T>C), TTC1340TTT (4024C>T), GAG1342GAA (4030G>A), GGA1343GGG (4033A>G), GGT1352GCT (4059G>C), CTT1354CTC (4066T>C), GAC1356GAT (4072C>T), CTG1358TTA (4076C>T 4078G>A), GTC1359GTT (4081C>T), AAG1360AAA (4084G>A), GGC1366GGT (4102C>T), AAA1369AAG (4111A>G), GAT1377GAC (4135T>C), CTG1378TTG (4136C>T), GCA1379GCG (4141A>G), GCG1387GCA (4165G>A), TTT1388TTC (4168T>C), CTG1391CTA (4177G>A), GAG1393GAT (4183G>T), CAT1398CAC (4198T>C), CTA1402CTT (4210A>T), GTC1404ATT (4214G>A 4216C>T), GTA1406GTT (4222A>T), GGT1407GGC (4225T>C), CCT1415CCC (4249T>C), TTT1418TTC (4258T>C), CAC1421CAT (4267C>T), AGA1423AGG (4273A>G), TAT1424TAC (4276T>C), AAG1425ACG (4278A>C), CAT1427CAC (4285T>C), TCC1433TCT (4303C>T), CGG1434CGA (4306G>A), GAC1436GAT (4312C>T), CAA1440CAG (4324A>G), TTA1444TTG (4336A>G), GCC1447GCT (4345C>T), TTA1448CTA (4346T>C), AAG1453AAA (4363G>A), CCG1458CCA (4378G>A), AAT1459CAC (4379A>C 4381T>C), CTG1460TTG (4382C>T), GCC1461GCT (4387C>T), CAA1462CAG (4390A>G), AAG1463GTA (4391A>G 4392A>T 4393G>A), GTT1464GTC (4396T>C), GCA1465GCG (4399A>G), GAA1466GAG (4402A>G), CTC1469CTT (4411C>T), CCC1471CCT (4417C>T), ATG1474GTG (4424A>G), GTA1476GTG (4432A>G), GGT1477GGC (4435T>C), AAA1480ACA (4443A>C), AAT1484AAC (4456T>C), GGC1486GGT (4462C>T), CTC1487CTT (4465C>T), TCC1489TCT (4471C>T), AAT1498AAC (4498T>C), CTC1504CTT (4516C>T), ACC1506ACT (4522C>T), CTT1510CTC (4534T>C), GAG1512GAA (4540G>A), GTT1513GTC (4543T>C), GAC1519GAT (4561C>T), ATT1520ACC (4563T>C 4564T>C), ATC1521ATA (4567C>A), AAT1524AAC (4576T>C), TTT1527TTC (4585T>C), TCC1528TCT (4588C>T), TTC1529TTT (4591C>T), TAC1530TAT (4594C>T), GTG1536GTT (4612G>T), GAG1545GAA (4639G>A), AAG1546AAA (4642G>A), AAA1550AAG (4654A>G), CTT1551CTC (4657T>C), AAG1552AGA (4659A>G 4660G>A), TAC1554TAT (4666C>T), TTG1556TTA (4672G>A), CCG1558CCA (4678G>A), AAG1563AAA (4693G>A), GAG1565GAA (4699G>A), GTT1569GTC (4711T>C), GAG1572GAA (4720G>A), GAT1575AAT (4727G>A), ACC1578ACT (4738C>T), AGG1582AGA (4750G>A), GGC1590GGT (4774C>T), AAG1594AAA (4786G>A), GAA1596GAG (4792A>G), AGC1598AGT (4798C>T), CTT1601CTC (4807T>C), TAT1605TAC (4819T>C), GGC1609GGT (4831C>T), CCT1610CCC (4834T>C), GAA1613GGA (4842A>G), ATA1620ATT (4864A>T), TCT1631TCC (4897T>C), TTG1632CTA (4898T>C 4900G>A), GGC1634GGG (4906C>G), GCT1636GCC (4912T>C), GCA1637GCT (4915A>T), TTC1643TTT (4933C>T), AAG1649AAA (4951G>A), CTG1650TTG (4952C>T), CTG1655CTA (4969G>A), AAG1656AAA (4972G>A), AGG1675AGA (5029G>A), TTT1676TTC (5032T>C)
433099.1%221694.2%327 (100%)307 (93.9%)0/0/0/00
Protein mutations:A13V (42C>T), N15D (47A>G), M28V (86A>G), I52K (159T>A), K67N (205G>T), P79I (239C>A 240C>T), E94D (286G>C), T96S (290A>T), G102E (309G>A 310T>A), T104S (314A>T 316C>T), K163R (492A>G), T167A (503A>G), F172Y (519T>A 520T>C), R189K (570G>A), R190K (573G>A), H192S (578C>T 579A>C), S195T (587T>A), C221S (665T>A), L251I (755T>A 757G>A), L277I (833T>A 835G>A)
Codon mutations:TCT5TCG (19T>G), GCT13GTT (42C>T), AAC15GAC (47A>G), ATG28GTG (86A>G), AGT31AGC (97T>C), ACA35ACT (109A>T), GCA42GCG (130A>G), ATA52AAA (159T>A), CCC60CCT (184C>T), ACC61ACT (187C>T), GTC65GTT (199C>T), AAG67AAT (205G>T), ATC68ATT (208C>T), CCT69CCC (211T>C), CCT71CCC (217T>C), GGG75GGA (229G>A), CCA79ATA (239C>A 240C>T), TAC83TAT (253C>T), AGC84AGT (256C>T), GGC88GGT (268C>T), GAG94GAC (286G>C), ACC96TCC (290A>T), ACT97ACC (295T>C), CAG100CAA (304G>A), GGT102GAA (309G>A 310T>A), ACC104TCT (314A>T 316C>T), GCG107GCC (325G>C), GTT110GTC (334T>C), CCC111CCT (337C>T), CAA115CAG (349A>G), AGG119AGA (361G>A), GAC120GAT (364C>T), GCC121GCT (367C>T), GAG123GAA (373G>A), CTA125CTT (379A>T), ATC129ATT (391C>T), GAG136GAA (412G>A), TAC140TAT (424C>T), GAA145GAG (439A>G), CTT150CTA (454T>A), CCG156CCA (472G>A), GCC162GCT (490C>T), AAG163AGG (492A>G), GAA165GAG (499A>G), ACA167GCA (503A>G), TCT170TCC (514T>C), CTG171TTG (515C>T), TTT172TAC (519T>A 520T>C), CCA175CCT (529A>T), TAT177TAC (535T>C), ACA178ACT (538A>T), CCA179CCT (541A>T), TAT181TAC (547T>C), CCG185CCA (559G>A), AGG189AAG (570G>A), AGA190AAA (573G>A), CTG191TTA (575C>T 577G>A), CAC192TCC (578C>T 579A>C), GAG194GAA (586G>A), TCG195ACG (587T>A), TTT196TTC (592T>C), GAT202GAC (610T>C), TGC205TGT (619C>T), TTC208TTT (628C>T), TGT210TGC (634T>C), AAC216AAT (652C>T), TTG220CTG (662T>C), TGC221AGC (665T>A), AGG227AGA (685G>A), ACC245ACT (739C>T), AAG250AAA (754G>A), TTG251ATA (755T>A 757G>A), TTG259CTG (779T>C), TGC260TGT (784C>T), GCG261GCT (787G>T), CTA262CTG (790A>G), TCT263TCC (793T>C), CTA265CTG (799A>G), ACT267ACC (805T>C), AGG268AGA (808G>A), ATC270ATA (814C>A), GAC272GAT (820C>T), GGA275GGG (829A>G), TTG277ATA (833T>A 835G>A), CTC280CTT (844C>T), CTT283CTC (853T>C), TTG286TTA (862G>A), GCT287GCC (865T>C), GGC295GGT (889C>T), GAA298GAG (898A>G), TCT299TCC (901T>C), TTG300CTG (902T>C), ATT301ATA (907T>A), GAG305GAA (919G>A), ATC320ATT (964C>T), CCT322CCC (970T>C), CTA324CTT (976A>T), CTG329CTA (991G>A), CAG330CAA (994G>A)
1366100%236397.4%366 (100%)353 (96.4%)0/0/0/00
Protein mutations:I12V (1028A>G 1030A>G), R64K (1185G>A 1186A>G), M72I (1210G>A), A93T (1271G>A), V161L (1475G>T), K166R (1491A>G), L178V (1526T>G), K181R (1536A>G), A256V (1761C>T), D288E (1858T>A), P312S (1928C>T), M320A (1952A>G 1953T>C 1954G>A), Y363F (2082A>T 2083C>T)
Codon mutations:GGG1GGA (997G>A), CCC2CCT (1000C>T), GTG7GTT (1015G>T), GAA8GAG (1018A>G), GTT10GTC (1024T>C), CCA11CCC (1027A>C), ATA12GTG (1028A>G 1030A>G), GGG16GGA (1042G>A), GGG22GGA (1060G>A), ATC28ATT (1078C>T), GCA36GCG (1102A>G), TCC37TCT (1105C>T), TTA39TTG (1111A>G), TAC48TAT (1138C>T), GGA49GGG (1141A>G), CTG50CTA (1144G>A), GAA51GAG (1147A>G), TTA53CTA (1151T>C), AAA54AAG (1156A>G), CCA62CCG (1180A>G), AGA64AAG (1185G>A 1186A>G), GAG65GAA (1189G>A), GAA66GAG (1192A>G), ATG72ATA (1210G>A), TCC75TCT (1219C>T), GCG79GCA (1231G>A), GTG80GTC (1234G>C), TTG81CTG (1235T>C), CAC90CAT (1264C>T), ACT92ACC (1270T>C), GCC93ACC (1271G>A), CTC94TTG (1274C>T 1276C>G), AGC100AGT (1294C>T), ACT107ACA (1315T>A), CTC110CTT (1324C>T), AGA116AGG (1342A>G), AAG117AAA (1345G>A), CTT118CTC (1348T>C), TCG119TCA (1351G>A), GCT123GCC (1363T>C), CCT125CCC (1369T>C), GAT126GAC (1372T>C), GCT133GCC (1393T>C), GCC139GCT (1411C>T), GCT140GCC (1414T>C), CGC142CGT (1420C>T), TCC143TCT (1423C>T), CAT146CAC (1432T>C), CGG147CGA (1435G>A), AAA149AAG (1441A>G), CTC152CTT (1450C>T), GTT159GTG (1471T>G), GTT160GTG (1474T>G), GTG161TTG (1475G>T), GGT165GGC (1489T>C), AAG166AGG (1491A>G), GGG168GGA (1498G>A), AAA171AAG (1507A>G), CTT174CTC (1516T>C), GCC175GCT (1519C>T), TTG178GTG (1526T>G), GCC179GCT (1531C>T), AAA181AGA (1536A>G), GCT184GCC (1546T>C), TCT185TCC (1549T>C), CTC186CTT (1552C>T), GGG188GGA (1558G>A), GGT193GGC (1573T>C), CTT194CTC (1576T>C), CCG196CCA (1582G>A), GGT199GGC (1591T>C), GTT200GTC (1594T>C), GAT201GAC (1597T>C), CAC202CAT (1600C>T), GAC204GAT (1606C>T), GCA205GCG (1609A>G), TAT206TAC (1612T>C), GGA208GGG (1618A>G), GAA209GAG (1621A>G), AGA210AGG (1624A>G), GTT212GTC (1630T>C), GAC216GAT (1642C>T), AGT220AGC (1654T>C), CCC222CCT (1660C>T), ATC223ATT (1663C>T), GAC225GAT (1669C>T), TTA229CTG (1679T>C 1681A>G), CTT232CTC (1690T>C), ACC235ACT (1699C>T), ACG239ACT (1711G>T), AAT241AAC (1717T>C), GAT243GAC (1723T>C), ATT245ATC (1729T>C), GAG246GAA (1732G>A), AGT254AGC (1756T>C), GCC256GTC (1761C>T), ATA257ATC (1765A>C), ATC258ATT (1768C>T), AAC262AAT (1780C>T), GCA267GCG (1795A>G), AAT273AAC (1813T>C), CGT280CGC (1834T>C), GAT288GAA (1858T>A), GAG293GAA (1873G>A), AAA296AAG (1882A>G), GAT298GAC (1888T>C), GGT301GGC (1897T>C), CAA302CAG (1900A>G), CCT312TCT (1928C>T), GAC313GAT (1933C>T), TCG315TCA (1939G>A), CTG319CTA (1951G>A), ATG320GCA (1952A>G 1953T>C 1954G>A), GCT322GCC (1960T>C), CCG323CCA (1963G>A), GGC326GGT (1972C>T), GGA331GGG (1987A>G), CAT335CAC (1999T>C), GGG336GGA (2002G>A), AAA337AAG (2005A>G), GTC339GTT (2011C>T), AAA341AAG (2017A>G), ACC342ACT (2020C>T), ACT344ACC (2026T>C), GGT346GGC (2032T>C), CTC348CTT (2038C>T), ATC349ATT (2041C>T), GCT350GCC (2044T>C), CGA351CGG (2047A>G), CTA355TTA (2057C>T), GAG362GAA (2080G>A), TAC363TTT (2082A>T 2083C>T), GAG364GAA (2086G>A), TTA365CTG (2087T>C 2089A>G)
1179100%113392.6%179 (100%)162 (90.5%)0/0/0/00
Protein mutations:T3A (2099A>G 2101C>T), P4L (2103C>T), R48K (2235G>A), I54V (2252A>G), S58K (2265G>A 2266T>G), G64S (2282G>A), M69I (2299G>A), D77N (2321G>A), V83I (2339G>A 2341T>C), N85S (2346A>G), T87A (2351A>G 2353T>C), I113V (2429A>G 2431T>C), V134A (2493T>C), D150N (2540G>A 2542T>C), A155T (2555G>A 2557T>C), D167E (2593C>G), V171I (2603G>A)
Codon mutations:ACC3GCT (2099A>G 2101C>T), CCC4CTC (2103C>T), ACT5ACC (2107T>C), AAC8AAT (2116C>T), TTT9TTC (2119T>C), GAC10GAT (2122C>T), AAC12AAT (2128C>T), GCG16GCC (2140G>C), TTC17TTT (2143C>T), AAC24AAT (2164C>T), AAG25AAA (2167G>A), TAC26TAT (2170C>T), GGG27GGA (2173G>A), GTC34GTT (2194C>T), GGA35GGG (2197A>G), AGG42AGA (2218G>A), GAG46GAA (2230G>A), AGA48AAA (2235G>A), AAC53AAT (2251C>T), ATC54GTC (2252A>G), AGT58AAG (2265G>A 2266T>G), CAG60CAA (2272G>A), GGT64AGT (2282G>A), GGC65GGT (2287C>T), TAT68TAC (2296T>C), ATG69ATA (2299G>A), GGT76GGC (2320T>C), GAT77AAT (2321G>A), GTT83ATC (2339G>A 2341T>C), CAG84CAA (2344G>A), AAC85AGC (2346A>G), ACT87GCC (2351A>G 2353T>C), GAA93GAG (2371A>G), GCC95GCT (2377C>T), GGC96GGT (2380C>T), CTA98CTG (2386A>G), CTT101TTG (2393C>T 2395T>G), TGT103TGC (2401T>C), AGG105AGA (2407G>A), ATT106ATC (2410T>C), TAT108TAC (2416T>C), TGC112TGT (2428C>T), ATT113GTC (2429A>G 2431T>C), ATC121ATT (2455C>T), GGA125GGG (2467A>G), GTC134GCC (2493T>C), CTT142CTA (2518T>A), CAG147CAA (2533G>A), GAT150AAC (2540G>A 2542T>C), GCT155ACC (2555G>A 2557T>C), GAT158GAC (2566T>C), CCC163CCT (2581C>T), GAT165GAC (2587T>C), GAC167GAG (2593C>G), TTC169TTT (2599C>T), GTT170GTC (2602T>C), GTT171ATT (2603G>A), ACC178ACT (2626C>T)
1133100%87897.2%133 (100%)129 (97.0%)0/0/0/00
Protein mutations:S8T (2651T>A), N38S (2742A>G 2743C>T), R129K (3015G>A), N131S (3021A>G)
Codon mutations:GGC1GGT (2632C>T), GGA4GGG (2641A>G), TCT8ACT (2651T>A), CGT10CGC (2659T>C), GGT11GGC (2662T>C), TTC17TTT (2680C>T), GAG25GAA (2704G>A), AAA31AAG (2722A>G), AGA32AGG (2725A>G), ATC33ATT (2728C>T), AGA37AGG (2740A>G), AAC38AGT (2742A>G 2743C>T), TCT42TCC (2755T>C), GAG44GAA (2761G>A), GAA45GAG (2764A>G), AGA50AGG (2779A>G), GAT51GAC (2782T>C), AAG52AAA (2785G>A), TAT53TAC (2788T>C), ATC59ATT (2806C>T), ACC63ACT (2818C>T), GAA64GAG (2821A>G), GAG65GAA (2824G>A), GAA70GAG (2839A>G), GAA71GAG (2842A>G), CGA76CGG (2857A>G), ATT79ATC (2866T>C), AAG85AAA (2884G>A), AAA88AAG (2893A>G), GAG90GAA (2899G>A), AGG91AGA (2902G>A), GGC95GGT (2914C>T), TTG96CTG (2915T>C), GGT99GGC (2926T>C), ATC102ATT (2935C>T), AAG104AAA (2941G>A), AGG105AGA (2944G>A), GAC108GAT (2953C>T), AAG111AAA (2962G>A), CCT112CCC (2965T>C), GGA114GGG (2971A>G), AAG115AAA (2974G>A), CTG116TTG (2975C>T), GAT119GAC (2986T>C), GAC120GAT (2989C>T), GTT124GTG (3001T>G), AGA129AAA (3015G>A), AAT131AGT (3021A>G), GAA133GAG (3028A>G)
1181100%125997.7%181 (100%)176 (97.2%)0/0/0/00
Protein mutations:Q37K (3137C>A), S43P (3155T>C), I49V (3173A>G), P90S (3296C>T 3298A>C), I152V (3482A>G 3484A>G)
Codon mutations:ATT5ATC (3043T>C), AGG8AGA (3052G>A), GGT15GGC (3073T>C), GGT17GGA (3079T>A), GTT20GTC (3088T>C), AGC23AGT (3097C>T), ACT29ACC (3115T>C), CAG37AAG (3137C>A), GGG41GGA (3151G>A), GTT42GTC (3154T>C), TCC43CCC (3155T>C), AAG45AAA (3163G>A), ATT47ATA (3169T>A), ATA49GTA (3173A>G), AAA51AAG (3181A>G), TCG52TCA (3184G>A), GGT53GGC (3187T>C), GAA54GAG (3190A>G), AGG59AGA (3205G>A), TTT60TTC (3208T>C), AGA65AGG (3223A>G), ACA69ACG (3235A>G), CTA73TTA (3245C>T), GGT76GGC (3256T>C), GCG77GCA (3259G>A), CCC78CCT (3262C>T), GAA79GAG (3265A>G), GGG80GGC (3268G>C), ACC81ACT (3271C>T), TTA85CTA (3281T>C), AAG88AAA (3292G>A), AGA89AGG (3295A>G), CCA90TCC (3296C>T 3298A>C), GGA92GGG (3304A>G), TTG97CTA (3317T>C 3319G>A), GCC99GCT (3325C>T), AGA100AGG (3328A>G), GGA102GGG (3334A>G), GCA105GCG (3343A>G), ATA109ATC (3355A>C), GGG115GGA (3373G>A), GGT116GGC (3376T>C), CAA117CAG (3379A>G), CTC121CTT (3391C>T), CTA122CTG (3394A>G), TCT125TCC (3403T>C), AGT129AGC (3415T>C), GGC133GGT (3427C>T), ACC134ACT (3430C>T), GAC138GAT (3442C>T), TGT141TGC (3451T>C), TAC143TAT (3457C>T), ATT144ATC (3460T>C), GGG148GGT (3472G>T), TAC151TAT (3481C>T), ATA152GTG (3482A>G 3484A>G), GGA155GGG (3493A>G), GCT160GCC (3508T>C), GCC161GCA (3511C>A), GGA163GGG (3517A>G), GGA164GGG (3520A>G), AGC174AGT (3550C>T), GAG175GAA (3553G>A), GGG176GGA (3556G>A), GAA177GAG (3559A>G), GCC178GCT (3562C>T)
1510100%349197.2%510 (100%)494 (96.9%)0/0/0/00
Protein mutations:K21T (3633A>C 3634G>A), P35S (3674C>T), D65E (3766C>G), Q102E (3875C>G 3877A>G), G163A (4059G>C), E204D (4183G>T), V215I (4214G>A 4216C>T), K236T (4278A>C), N270H (4379A>C 4381T>C), K274V (4391A>G 4392A>T 4393G>A), M285V (4424A>G), K291T (4443A>C), I331T (4563T>C 4564T>C), K363R (4659A>G 4660G>A), D386N (4727G>A), E424G (4842A>G)
Codon mutations:GGC1GGT (3574C>T), GGA6GGG (3589A>G), ACC7ACA (3592C>A), TGC9TGT (3598C>T), TTA14CTA (3611T>C), GGT15GGC (3616T>C), AAG21ACA (3633A>C 3634G>A), CTC22CTT (3637C>T), AAG25AAA (3646G>A), ACT26ACC (3649T>C), AAG27AAA (3652G>A), TTT28TTC (3655T>C), TCA31TCG (3664A>G), CCA35TCA (3674C>T), GGT39GGC (3688T>C), GGC47GGT (3712C>T), CCC51CCT (3724C>T), AGA52AGG (3727A>G), AAG54AAA (3733G>A), CCC57CCT (3742C>T), TTG59CTG (3746T>C), CAA60CAG (3751A>G), GTT62GTC (3757T>C), GAC65GAG (3766C>G), CTG67TTG (3770C>T), AAA68AAG (3775A>G), ACT71ACA (3784T>A), AAA76AAG (3799A>G), GTG82GTA (3817G>A), GAG84GAA (3823G>A), AAA88AAG (3835A>G), GTT93GTC (3850T>C), GAA95GAG (3856A>G), GAC99GAT (3868C>T), CAA102GAG (3875C>G 3877A>G), TCA105TCG (3886A>G), GCG107GCA (3892G>A), CAG108CAA (3895G>A), GCA109GCT (3898A>T), GCA111GCG (3904A>G), CTC113CTT (3910C>T), AGC119AGT (3928C>T), GGC120GGT (3931C>T), CAC121CAT (3934C>T), AAG127AAA (3952G>A), AAA139AAG (3988A>G), TTG140CTG (3989T>C), GCT147GCC (4012T>C), TTC151TTT (4024C>T), GAG153GAA (4030G>A), GGA154GGG (4033A>G), GGT163GCT (4059G>C), CTT165CTC (4066T>C), GAC167GAT (4072C>T), CTG169TTA (4076C>T 4078G>A), GTC170GTT (4081C>T), AAG171AAA (4084G>A), GGC177GGT (4102C>T), AAA180AAG (4111A>G), GAT188GAC (4135T>C), CTG189TTG (4136C>T), GCA190GCG (4141A>G), GCG198GCA (4165G>A), TTT199TTC (4168T>C), CTG202CTA (4177G>A), GAG204GAT (4183G>T), CAT209CAC (4198T>C), CTA213CTT (4210A>T), GTC215ATT (4214G>A 4216C>T), GTA217GTT (4222A>T), GGT218GGC (4225T>C), CCT226CCC (4249T>C), TTT229TTC (4258T>C), CAC232CAT (4267C>T), AGA234AGG (4273A>G), TAT235TAC (4276T>C), AAG236ACG (4278A>C), CAT238CAC (4285T>C), TCC244TCT (4303C>T), CGG245CGA (4306G>A), GAC247GAT (4312C>T), CAA251CAG (4324A>G), TTA255TTG (4336A>G), GCC258GCT (4345C>T), TTA259CTA (4346T>C), AAG264AAA (4363G>A), CCG269CCA (4378G>A), AAT270CAC (4379A>C 4381T>C), CTG271TTG (4382C>T), GCC272GCT (4387C>T), CAA273CAG (4390A>G), AAG274GTA (4391A>G 4392A>T 4393G>A), GTT275GTC (4396T>C), GCA276GCG (4399A>G), GAA277GAG (4402A>G), CTC280CTT (4411C>T), CCC282CCT (4417C>T), ATG285GTG (4424A>G), GTA287GTG (4432A>G), GGT288GGC (4435T>C), AAA291ACA (4443A>C), AAT295AAC (4456T>C), GGC297GGT (4462C>T), CTC298CTT (4465C>T), TCC300TCT (4471C>T), AAT309AAC (4498T>C), CTC315CTT (4516C>T), ACC317ACT (4522C>T), CTT321CTC (4534T>C), GAG323GAA (4540G>A), GTT324GTC (4543T>C), GAC330GAT (4561C>T), ATT331ACC (4563T>C 4564T>C), ATC332ATA (4567C>A), AAT335AAC (4576T>C), TTT338TTC (4585T>C), TCC339TCT (4588C>T), TTC340TTT (4591C>T), TAC341TAT (4594C>T), GTG347GTT (4612G>T), GAG356GAA (4639G>A), AAG357AAA (4642G>A), AAA361AAG (4654A>G), CTT362CTC (4657T>C), AAG363AGA (4659A>G 4660G>A), TAC365TAT (4666C>T), TTG367TTA (4672G>A), CCG369CCA (4678G>A), AAG374AAA (4693G>A), GAG376GAA (4699G>A), GTT380GTC (4711T>C), GAG383GAA (4720G>A), GAT386AAT (4727G>A), ACC389ACT (4738C>T), AGG393AGA (4750G>A), GGC401GGT (4774C>T), AAG405AAA (4786G>A), GAA407GAG (4792A>G), AGC409AGT (4798C>T), CTT412CTC (4807T>C), TAT416TAC (4819T>C), GGC420GGT (4831C>T), CCT421CCC (4834T>C), GAA424GGA (4842A>G), ATA431ATT (4864A>T), TCT442TCC (4897T>C), TTG443CTA (4898T>C 4900G>A), GGC445GGG (4906C>G), GCT447GCC (4912T>C), GCA448GCT (4915A>T), TTC454TTT (4933C>T), AAG460AAA (4951G>A), CTG461TTG (4952C>T), CTG466CTA (4969G>A), AAG467AAA (4972G>A), AGG486AGA (5029G>A), TTT487TTC (5032T>C)
1536100%271871.2%534 (98.3%)357 (65.7%)7/2/0/01
Protein mutations:A9N (5109G>A 5110C>A 5111T>C), N12D (5118A>G), D13G (5122A>G 5123T>G), G14S (5124G>T 5125G>C 5126T>C), A15T (5127G>A), G17N (5133G>A 5134G>A 5135T>C), A22V (5149C>T 5150T>C), T26V (5160A>G 5161C>T 5162C>T), A33V (5182C>T), S36A (5190T>G 5192A>C), L41V (5205C>G 5207C>A), T42A (5208A>G 5210C>G), N45Q (5217A>C 5219C>A), I47V (5223A>G 5225T>A), L54N (5244T>A 5245T>A 5246A>C), N61G (5265A>G 5266A>G), S71A (5295T>G 5297G>T), V75I (5307G>A 5309C>A), L77W (5314T>G 5315A>G), N78S (5317A>G 5318T>C), L79A (5319T>G 5320T>C), E80P (5322G>C 5323A>C 5324A>C), E84D (5336A>T), A90S (5352G>T 5354A>C), S93A (5361T>G 5363T>C), V103F (5391G>T), L108I (5406C>A 5408A>C), L119I (5439C>A 5441G>C), V120I (5442G>A 5444G>A), H127N (5463C>A), L130T (5472T>A 5473T>C 5474A>T), N132G (5478A>G 5479A>G), I133L (5481A>T 5483A>G), G136S (5490G>A), I138V (5496A>G 5498A>C), V144I (5514G>A), I146V (5520A>G 5522T>A), T150Q (5532A>C 5533C>A 5534T>A), L156I (5550T>A 5552G>T), F166Y (5581T>A 5582T>C), Q171S (5595C>T 5596A>C 5597G>A), E173D (5603A>C), R175T (5608G>C 5609G>C), M176I (5612G>C), R177K (5614G>A), V179I (5619G>A), S188A (5646T>G), G190N (5652G>A 5653G>A), S191A (5655T>G 5657T>C), N213I (5722A>T 5723T>A), Y214F (5725A>T), K223R (5752A>G), T228S (5766A>T 5768A>T), L229V (5769C>G), I231V (5775A>G 5777C>T), I234V (5784A>G 5786A>T), G235E (5788G>A), L237M (5793T>A 5795A>G), V244I (5814G>A 5816A>T), I246L (5820A>T 5822A>G), D247E (5825T>A), E248K (5826G>A), Y250F (5833A>T), S252G (5838A>G 5840T>C), N254S (5845A>G), E255S (5847G>A 5848A>G 5849G>T), S256A (5850A>G 5851G>C 5852T>C), L257F (5853C>T 5855G>T), A267T (5883G>A 5885A>G), L268T (5886C>A 5887T>C 5888A>T), E271V (5896A>T), Q273L (5902A>T 5903G>A), L279S (5919C>T 5920T>C 5921C>T), T281V (5925A>G 5926C>T 5927G>C), A282N (5928G>A 5929C>A 5930G>C), S285T (5937T>A 5939G>C), R289D (5949C>G 5950G>A 5951G>C), I290V (5952A>G), N291T (5956A>C 5957T>C), Q292H (5960G>T), K293I (5962A>T 5963G>T), V294P (5964G>C 5965T>C 5966G>A), S295G (5967A>G 5969T>C), G296S (5970G>A 5972G>T), E297R (5973G>C 5974A>G 5975A>T), H299_V300del (5979_5984delCATGTT), W301Y (5986G>A 5987G>C), N302T (5989A>C 5990T>A), Q304N (5994C>A 5996G>T), V305L (5997G>T 5999C>G), T306A (6000A>G), N307S (6003A>T 6004A>C), I308Q (6006A>C 6007T>A 6008C>A), G310W (6012G>T), T311N (6016C>A), P312S (6018C>A 6019C>G), F313Y (6022T>A 6023T>C), D318E (6038T>A), V319I (6039G>A), S329V (6069T>G 6070C>T 6071T>G), L332I (6078C>A 6080C>T), F333Q (6081T>C 6082T>A 6083T>A), S337T (6094G>C), R339T (6100G>C 6101A>C), D340T (6102G>A 6103A>C 6104C>A), H341R (6105C>A 6106A>G 6107T>G), D342T (6108G>A 6109A>C 6110T>A), A344G (6115C>G), C345S (6118G>C 6119C>G), C345_R346insT (6119_6120insACC), S347G (6123A>G 6125T>C), D349K (6129G>A 6131T>A), V351T (6135G>A 6136T>C), I352V (6138A>G 6140T>G), A353Y (6141G>T 6142C>A 6143A>C), N355G (6147A>G 6148A>G 6149C>G), K358D (6156A>G 6158A>C), T360S (6162A>T 6164C>T), A365R (6177G>A 6178C>G 6179T>A), I366V (6180A>G 6182A>T), I368F (6186A>T), G369A (6190G>C), W371D (6195T>G 6196G>A 6197G>C), E372T (6198G>A 6199A>C), E373D (6203A>C), D374N (6204G>A 6206C>T), V376F (6210G>T 6212G>T), H377E (6213C>G 6215C>A), I378T (6217T>C 6218C>T), P381N (6225C>A 6226C>A 6227T>C), L389V (6249T>G 6251G>T), F390I (6252T>A 6254T>C), E391Q (6255G>C 6257A>G), G394S (6264G>A), F395T (6267T>A 6268T>C), N396T (6271A>C), N396_Q397insPRNEPQ (6272_6273insCCCCGAAATGAACCCCAA), T399V (6279A>G 6280C>T 6281A>G), N402S (6289A>G), A406R (6300G>A 6301C>G 6302C>A), L407N (6303T>A 6304T>A 6305A>C), T408I (6307C>T 6308A>T), L409H (6310T>A), M411V (6315A>G), G412H (6318G>C 6319G>A 6320A>C), P416A (6330C>G), I426L (6360A>C 6362T>C), H432T (6378C>A 6379A>C 6380C>T), I433M (6383T>G), L435G (6387C>G 6388T>G 6389T>A), K436C (6390A>T 6391A>G 6392A>C), G437S (6393G>A 6395A>C), V439Y (6399G>T 6400T>A 6401G>C), A440P (6402G>C 6404G>C), D441N (6405G>A), P442M (6408C>A 6409C>T 6410A>G), V443D (6412T>A 6413T>C), I444L (6414A>T 6416T>G), I453V (6441A>G 6443C>G), H455Y (6447C>T), L456F (6450C>T 6452T>C), S460A (6462T>G 6464G>A), S463A (6471T>G), I470L (6492A>C 6494T>A), T473V (6501A>G 6502C>T 6503A>G), A484C (6534G>T 6535C>G 6536A>T), R488K (6547G>A 6548G>A), I492V (6558A>G 6560C>T), N496H (6570A>C 6572T>C), S499Q (6579A>C 6580G>A 6581C>A), R500H (6582A>C 6583G>A 6584A>T), P501D (6585C>G 6586C>A 6587G>T), I502L (6588A>T 6590T>G), V504I (6594G>A 6596A>C), A506P (6600G>C 6602T>C), S521T (6645T>A 6647T>A), T527N (6664C>A), N529T (6670A>C 6671T>G), V534A (6685T>C 6686G>A), Q535L (6687C>T 6688A>T 6689G>A)
Codon mutations:GCT9AAC (5109G>A 5110C>A 5111T>C), AAT12GAT (5118A>G), GAT13GGG (5122A>G 5123T>G), GGT14TCC (5124G>T 5125G>C 5126T>C), GCA15ACA (5127G>A), GGT17AAC (5133G>A 5134G>A 5135T>C), GTA19GTC (5141A>C), GCT22GTC (5149C>T 5150T>C), AAC23AAT (5153C>T), ACC26GTT (5160A>G 5161C>T 5162C>T), GCA28GCT (5168A>T), CTT29TTG (5169C>T 5171T>G), GAA30GAG (5174A>G), CCG31CCC (5177G>C), GTG32GTA (5180G>A), GCT33GTT (5182C>T), GGG34GGT (5186G>T), GCT35GCC (5189T>C), TCA36GCC (5190T>G 5192A>C), ATA37ATT (5195A>T), GCC38GCG (5198C>G), GCC39GCA (5201C>A), CCA40CCT (5204A>T), CTC41GTA (5205C>G 5207C>A), ACC42GCG (5208A>G 5210C>G), AAC45CAA (5217A>C 5219C>A), ATT47GTA (5223A>G 5225T>A), ATA48ATT (5228A>T), TTA54AAC (5244T>A 5245T>A 5246A>C), GTG57GTA (5255G>A), CAG58CAA (5258G>A), GCT59GCC (5261T>C), CCC60CCT (5264C>T), AAT61GGT (5265A>G 5266A>G), TTC64TTT (5276C>T), ACG65ACA (5279G>A), GTT66GTA (5282T>A), TCA67TCC (5285A>C), CCC68CCT (5288C>T), CGC69AGA (5289C>A 5291C>A), TCG71GCT (5295T>G 5297G>T), CCC72CCA (5300C>A), GGG73GGT (5303G>T), GTC75ATA (5307G>A 5309C>A), TTA77TGG (5314T>G 5315A>G), AAT78AGC (5317A>G 5318T>C), TTG79GCG (5319T>G 5320T>C), GAA80CCC (5322G>C 5323A>C 5324A>C), CCC83CCT (5333C>T), GAA84GAT (5336A>T), CTA85TTG (5337C>T 5339A>G), CCA87CCT (5345A>T), CTA89CTT (5351A>T), GCA90TCC (5352G>T 5354A>C), CAC91CAT (5357C>T), CTC92TTG (5358C>T 5360C>G), TCT93GCC (5361T>G 5363T>C), TAT96TAC (5372T>C), GCG100GCA (5384G>A), GGG102GGT (5390G>T), GTT103TTT (5391G>T), GAG104GAA (5396G>A), CAA106CAG (5402A>G), CTA108ATC (5406C>A 5408A>C), CTG109CTC (5411G>C), GCT110GCG (5414T>G), AAT112AAC (5420T>C), ACA115ACC (5429A>C), GCT116GCC (5432T>C), GGA117GGG (5435A>G), CTG119ATC (5439C>A 5441G>C), GTG120ATA (5442G>A 5444G>A), GCC122GCA (5450C>A), GTT124GTC (5456T>C), CCC125CCA (5459C>A), CCT126CCA (5462T>A), CAT127AAT (5463C>A), TTT128TTC (5468T>C), TTA130ACT (5472T>A 5473T>C 5474A>T), AAT132GGT (5478A>G 5479A>G), ATA133TTG (5481A>T 5483A>G), CCT135CCC (5489T>C), GGC136AGC (5490G>A), ATA138GTC (5496A>G 5498A>C), CCT142CCC (5510T>C), CAT143CAC (5513T>C), GTA144ATA (5514G>A), ATT145ATA (5519T>A), ATT146GTA (5520A>G 5522T>A), ACT150CAA (5532A>C 5533C>A 5534T>A), TTA151TTG (5537A>G), CCA153CCT (5543A>T), GTT154GTG (5546T>G), TTG156ATT (5550T>A 5552G>T), CTT158TTA (5556C>T 5558T>A), CCT159CCC (5561T>C), GTT161GTC (5567T>C), TTT166TAC (5581T>A 5582T>C), CAG170CAA (5594G>A), CAG171TCA (5595C>T 5596A>C 5597G>A), GAA173GAC (5603A>C), CCG174CCC (5606G>C), AGG175ACC (5608G>C 5609G>C), ATG176ATC (5612G>C), AGA177AAA (5614G>A), CTT178TTG (5616C>T 5618T>G), GTA179ATA (5619G>A), CTT182TTG (5628C>T 5630T>G), TAT183TAC (5633T>C), ACT184ACA (5636T>A), CCT185CCA (5639T>A), AGA187AGG (5645A>G), TCT188GCT (5646T>G), GGT190AAT (5652G>A 5653G>A), TCT191GCC (5655T>G 5657T>C), GGT192GGG (5660T>G), GAT193GAC (5663T>C), GTA195GTC (5669A>C), ACT197ACA (5675T>A), GTC198GTT (5678C>T), TCC199TCT (5681C>T), TGC200TGT (5684C>T), AGG201CGA (5685A>C 5687G>A), GTG202GTT (5690G>T), CTT203CTC (5693T>C), ACC204ACG (5696C>G), CGA205AGA (5697C>A), CCT206CCA (5702T>A), CCT208CCC (5708T>C), TTT212TTC (5720T>C), AAT213ATA (5722A>T 5723T>A), TAT214TTT (5725A>T), GTC216GTG (5732C>G), CCC217CCA (5735C>A), CCT218CCC (5738T>C), ACT219ACA (5741T>A), TCT222TCA (5750T>A), AAA223AGA (5752A>G), ACC224ACT (5756C>T), CCC226CCA (5762C>A), ACA228TCT (5766A>T 5768A>T), CTC229GTC (5769C>G), CCT230CCA (5774T>A), ATC231GTT (5775A>G 5777C>T), TTG232TTA (5780G>A), ATA234GTT (5784A>G 5786A>T), GGG235GAG (5788G>A), TTA237ATG (5793T>A 5795A>G), AAC239AAT (5801C>T), TCC240TCA (5804C>A), CCT243CCC (5813T>C), GTA244ATT (5814G>A 5816A>T), ATA246TTG (5820A>T 5822A>G), GAT247GAA (5825T>A), GAG248AAG (5826G>A), CTC249TTG (5829C>T 5831C>G), TAC250TTC (5833A>T), ACC251ACG (5837C>G), AGT252GGC (5838A>G 5840T>C), AAT254AGT (5845A>G), GAG255AGT (5847G>A 5848A>G 5849G>T), AGT256GCC (5850A>G 5851G>C 5852T>C), CTG257TTT (5853C>T 5855G>T), GTG258GTT (5858G>T), GTG259GTT (5861G>T), CCC261CCA (5867C>A), CAG262CAA (5870G>A), GGG264GGC (5876G>C), AGA265AGG (5879A>G), GCA267ACG (5883G>A 5885A>G), CTA268ACT (5886C>A 5887T>C 5888A>T), GGG270GGC (5894G>C), GAG271GTG (5896A>T), CTG272CTC (5900G>C), CAG273CTA (5902A>T 5903G>A), GGC274GGT (5906C>T), ACG275ACT (5909G>T), ACT276ACC (5912T>C), CAG277CAA (5915G>A), CTC278CTG (5918C>G), CTC279TCT (5919C>T 5920T>C 5921C>T), ACG281GTC (5925A>G 5926C>T 5927G>C), GCG282AAC (5928G>A 5929C>A 5930G>C), TCG285ACC (5937T>A 5939G>C), AGG287AGA (5945G>A), GGC288GGG (5948C>G), CGG289GAC (5949C>G 5950G>A 5951G>C), ATC290GTC (5952A>G), AAT291ACC (5956A>C 5957T>C), CAG292CAT (5960G>T), AAG293ATT (5962A>T 5963G>T), GTG294CCA (5964G>C 5965T>C 5966G>A), AGT295GGC (5967A>G 5969T>C), GGG296AGT (5970G>A 5972G>T), GAA297CGT (5973G>C 5974A>G 5975A>T), CAT299_GTT300del (5979_5984delCATGTT), TGG301TAC (5986G>A 5987G>C), AAT302ACA (5989A>C 5990T>A), CAG304AAT (5994C>A 5996G>T), GTC305TTG (5997G>T 5999C>G), ACC306GCC (6000A>G), AAC307TCC (6003A>T 6004A>C), ATC308CAA (6006A>C 6007T>A 6008C>A), AAC309AAT (6011C>T), GGG310TGG (6012G>T), ACC311AAC (6016C>A), CCT312AGT (6018C>A 6019C>G), TTT313TAC (6022T>A 6023T>C), GAG317GAA (6035G>A), GAT318GAA (6038T>A), GTC319ATC (6039G>A), CCG320CCA (6044G>A), GCT321GCC (6047T>C), GGC324GGA (6056C>A), TCT329GTG (6069T>G 6070C>T 6071T>G), GGC330GGG (6074C>G), CTC332ATT (6078C>A 6080C>T), TTT333CAA (6081T>C 6082T>A 6083T>A), GTA335GTG (6089A>G), CTA336CTC (6092A>C), AGC337ACC (6094G>C), CAG338CAA (6098G>A), AGA339ACC (6100G>C 6101A>C), GAC340ACA (6102G>A 6103A>C 6104C>A), CAT341AGG (6105C>A 6106A>G 6107T>G), GAT342ACA (6108G>A 6109A>C 6110T>A), GCC344GGC (6115C>G), TGC345TCG (6118G>C 6119C>G), TGC345_AGG346insACC (6119_6120insACC), AGG346CGC (6120A>C 6122G>C), AGT347GGC (6123A>G 6125T>C), CAT348CAC (6128T>C), GAT349AAA (6129G>A 6131T>A), GCA350GCT (6134A>T), GTA351ACA (6135G>A 6136T>C), ATT352GTG (6138A>G 6140T>G), GCA353TAC (6141G>T 6142C>A 6143A>C), ACC354ACT (6146C>T), AAC355GGG (6147A>G 6148A>G 6149C>G), TCT356AGC (6150T>A 6151C>G 6152T>C), AAA358GAC (6156A>G 6158A>C), ACC360TCT (6162A>T 6164C>T), TTG363CTG (6171T>C), GGC364GGT (6176C>T), GCT365AGA (6177G>A 6178C>G 6179T>A), ATA366GTT (6180A>G 6182A>T), ATT368TTT (6186A>T), GGC369GCC (6190G>C), ACA370ACT (6194A>T), TGG371GAC (6195T>G 6196G>A 6197G>C), GAA372ACA (6198G>A 6199A>C), GAA373GAC (6203A>C), GAC374AAT (6204G>A 6206C>T), GTG376TTT (6210G>T 6212G>T), CAC377GAA (6213C>G 6215C>A), ATC378ACT (6217T>C 6218C>T), CCT381AAC (6225C>A 6226C>A 6227T>C), ACT382ACA (6230T>A), TTT384TTC (6236T>C), ACT385ACC (6239T>C), GTT387GTC (6245T>C), GGC388GGT (6248C>T), TTG389GTT (6249T>G 6251G>T), TTT390ATC (6252T>A 6254T>C), GAA391CAG (6255G>C 6257A>G), GGA393GGT (6263A>T), GGT394AGT (6264G>A), TTC395ACC (6267T>A 6268T>C), AAC396ACC (6271A>C), AAC396_CAG397insCCCCGAAATGAACCCCAA (6272_6273insCCCCGAAATGAACCCCAA), CAG397CAA (6275G>A), ACA399GTG (6279A>G 6280C>T 6281A>G), CCC401CCA (6287C>A), AAT402AGT (6289A>G), TAT403TAC (6293T>C), TCT404TCA (6296T>A), GGA405GGC (6299A>C), GCC406AGA (6300G>A 6301C>G 6302C>A), TTA407AAC (6303T>A 6304T>A 6305A>C), ACA408ATT (6307C>T 6308A>T), CTT409CAT (6310T>A), ATG411GTG (6315A>G), GGA412CAC (6318G>C 6319G>A 6320A>C), TTG413CTG (6321T>C), CCT415CCC (6329T>C), CCT416GCT (6330C>G), GTG417GTA (6335G>A), ACC420ACT (6344C>T), CCT422CCG (6350T>G), GGT423GGC (6353T>C), GAA424GAG (6356A>G), CAA425CAG (6359A>G), ATT426CTC (6360A>C 6362T>C), CTT427CTC (6365T>C), TTT429TTC (6371T>C), TCC431TCT (6377C>T), CAC432ACT (6378C>A 6379A>C 6380C>T), ATT433ATG (6383T>G), CCT434CCC (6386T>C), CTT435GGA (6387C>G 6388T>G 6389T>A), AAA436TGC (6390A>T 6391A>G 6392A>C), GGA437AGC (6393G>A 6395A>C), GGT438GGG (6398T>G), GTG439TAC (6399G>T 6400T>A 6401G>C), GCG440CCC (6402G>C 6404G>C), GAC441AAC (6405G>A), CCA442ATG (6408C>A 6409C>T 6410A>G), GTT443GAC (6412T>A 6413T>C), ATT444TTG (6414A>T 6416T>G), GAT445GAC (6419T>C), CTC447CTG (6425C>G), TTG448CTC (6426T>C 6428G>C), CCT449CCC (6431T>C), CAA450CAG (6434A>G), ATC453GTG (6441A>G 6443C>G), CAT455TAT (6447C>T), CTT456TTC (6450C>T 6452T>C), CAA458CAG (6458A>G), TCG460GCA (6462T>G 6464G>A), CCC462CCA (6470C>A), TCA463GCA (6471T>G), TCA465TCT (6479A>T), GTA467GTG (6485A>G), GCA468GCT (6488A>T), ATT470CTA (6492A>C 6494T>A), AGG471AGA (6497G>A), ACA473GTG (6501A>G 6502C>T 6503A>G), CCA475CCG (6509A>G), GGA478GGT (6518A>T), CGT479AGG (6519C>A 6521T>G), CTA481TTG (6525C>T 6527A>G), GAA483GAG (6533A>G), GCA484TGT (6534G>T 6535C>G 6536A>T), AAA485AAG (6539A>G), TTA486CTT (6540T>C 6542A>T), CAC487CAT (6545C>T), AGG488AAA (6547G>A 6548G>A), AGT489TCA (6549A>T 6550G>C 6551T>A), GGT490GGC (6554T>C), TAC491TAT (6557C>T), ATC492GTT (6558A>G 6560C>T), GCC495GCT (6569C>T), AAT496CAC (6570A>C 6572T>C), GGT498GGC (6578T>C), AGC499CAA (6579A>C 6580G>A 6581C>A), AGA500CAT (6582A>C 6583G>A 6584A>T), CCG501GAT (6585C>G 6586C>A 6587G>T), ATT502TTG (6588A>T 6590T>G), GTG503GTT (6593G>T), GTA504ATC (6594G>A 6596A>C), CCA505CCC (6599A>C), GCT506CCC (6600G>C 6602T>C), TAC509TAT (6611C>T), TTC510TTT (6614C>T), AGG511AGA (6617G>A), GAC513GAT (6623C>T), TCT514TCC (6626T>C), GTT516GTC (6632T>C), AAT517AAC (6635T>C), CAA518CAG (6638A>G), TAT520TAC (6644T>C), TCT521ACA (6645T>A 6647T>A), ACT527AAT (6664C>A), GGA528GGG (6668A>G), AAT529ACG (6670A>C 6671T>G), CGC531CGT (6677C>T), AGG533CGT (6681A>C 6683G>T), GTG534GCA (6685T>C 6686G>A), CAG535TTA (6687C>T 6688A>T 6689G>A)
1260100%98359.1%258 (95.2%)152 (56.1%)11/2/0/01
Protein mutations:I6F (6707A>T 6709A>T), G11S (6722G>T 6723G>C), I13V (6728A>G 6730A>C), V14L (6731G>C 6733C>T), T15G (6734A>G 6735C>G), N16S (6737A>T 6738A>C), I18L (6743A>C), V22I (6755G>A 6757G>C), N27G (6770A>G 6771A>G 6772T>G), D34E (6793C>A), K39R (6807A>G 6808G>A), Q40K (6809C>A), Q40_L41insLQQASFQFSSN (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT), N47Q (6830A>C 6832C>A), V57I (6860G>A 6862C>T), Q58E (6863C>G), Q62K (6875C>A), A65Q (6884G>C 6885C>A 6886T>G), D66E (6889T>A), I68M (6895T>G), A69R (6896G>A 6897C>G), I70V (6899A>G 6901C>T), R71K (6903G>A), G73A (6909G>C 6910G>A), V74M (6911G>A), T76L (6917A>C 6918C>T 6919C>A), A77E (6921C>A), P82E (6935C>G 6936C>A 6937C>G), V90I (6959G>A 6961T>C), Q96K (6977C>A 6979G>A), V97T (6980G>A 6981T>C), N101S (6993A>G 6994T>C), G109D (7017G>A 7018A>T), T111R (7023C>G), K112T (7026A>C 7027A>T), T115Y (7034A>T 7035C>A), F116N (7037T>A 7038T>A 7039C>T), S117A (7040T>G 7042C>A), G119R (7046G>C 7048A>C), T121S (7052A>T), N122T (7056A>C 7057T>C), V123P (7058G>C 7059T>C 7060T>C), S124Q (7061T>C 7062C>A 7063T>A), H125P (7065A>C 7066T>C), A126S (7067G>T 7069C>G), R127G (7070A>G 7072A>G), T128A (7073A>G 7075T>A), V129L (7076G>C 7078C>A), D130P (7079G>C 7080A>C 7081C>A), L131G (7082C>G 7083T>G 7084G>A), T132R (7086C>G 7087C>A), K133A (7088A>G 7089A>C 7090G>T), K134N (7093G>T), T135L (7094A>C 7095C>T 7096A>T), S136R (7097T>A 7098C>G 7099A>G), P139V (7106C>G 7107C>T 7108A>C), A140P (7109G>C 7111T>C), P141A (7112C>G 7114T>C), A142R (7115G>C 7116C>G), P143G (7118C>G 7119C>G), V144S (7121G>T 7122T>C 7123T>C), R146S (7129A>C), P147T (7130C>A 7132T>G), S148F (7133A>T 7134G>T), V150N (7139G>A 7140T>A), A151S (7142G>T 7144C>T), T153I (7149C>T 7150A>T), V154A (7152T>C 7153C>T), S155T (7154T>A 7156C>T), T156S (7157A>T 7159C>T), R157V (7160C>G 7161G>T 7162C>G), S158Y (7164C>A 7165A>T), T159S (7166A>T 7168C>A), L160N (7169T>A 7170T>A 7171G>T), I161Q (7172A>C 7173T>A 7174T>A), S162T (7176G>C), G163T (7178G>A 7179G>C 7180G>C), S165T (7184T>A 7186C>G), N166R (7188A>G 7189T>A), P167L (7191C>T), S168G (7193T>G 7194C>G), L170T (7199T>A 7200T>C), R172G (7205A>G 7207G>T), S174G (7211T>G 7212C>G), S175T (7214T>A 7216T>C), Q180L (7230A>T 7231A>C), T182_S183del (7235_7240delACCTCC), S185T (7244T>A), S186A (7247T>G 7249T>A), S189R (7258T>G), E190S (7259G>A 7260A>G 7261G>C), R193E (7268C>G 7269G>A 7270C>G), S194D (7271A>G 7272G>A 7273C>T), A198N (7283G>A 7284C>A 7285A>T), E200S (7289G>T 7290A>C 7291G>A), Y202F (7296A>T), L207H (7311T>A 7312A>T), R208N (7313C>A 7314G>A), T209I (7317C>T 7318A>C), A210S (7319G>T 7321C>G), Y211F (7323A>T), A219S (7346G>T 7348T>C), N222Q (7355A>C 7357T>A), S238G (7403T>G 7404C>G 7405T>C), H243R (7419A>G), L251I (7442C>A 7444C>T), R253K (7448C>A 7449G>A), Q258R (7464A>G 7465A>G)
Codon mutations:TTT5TTC (6706T>C), ATA6TTT (6707A>T 6709A>T), GCG7GCT (6712G>T), GGG8GGA (6715G>A), CTT9TTG (6716C>T 6718T>G), GCT10GCA (6721T>A), GGT11TCT (6722G>T 6723G>C), ATA13GTC (6728A>G 6730A>C), GTC14CTT (6731G>C 6733C>T), ACC15GGC (6734A>G 6735C>G), AAT16TCT (6737A>T 6738A>C), GGC17GGA (6742C>A), ATT18CTT (6743A>C), GGC19GGT (6748C>T), TCA20TCC (6751A>C), CTT21CTA (6754T>A), GTG22ATC (6755G>A 6757G>C), AAC23AAT (6760C>T), AAT27GGG (6770A>G 6771A>G 6772T>G), GCA28GCC (6775A>C), ATA29ATC (6778A>C), GTA33GTT (6790A>T), GAC34GAA (6793C>A), AAC37AAT (6802C>T), AAG39AGA (6807A>G 6808G>A), CAA40AAA (6809C>A), CAA40_CTA41insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT), CAG42CAA (6817G>A), TCT45TCC (6826T>C), TTC46TTT (6829C>T), AAC47CAA (6830A>C 6832C>A), GAT49GAC (6838T>C), CTG53CTC (6850G>C), GCT55GCA (6856T>A), GTC57ATT (6860G>A 6862C>T), CAG58GAG (6863C>G), CAG62AAG (6875C>A), CTG63TTG (6878C>T), CAG64CAA (6883G>A), GCT65CAG (6884G>C 6885C>A 6886T>G), GAT66GAA (6889T>A), ATT68ATG (6895T>G), GCA69AGA (6896G>A 6897C>G), ATC70GTT (6899A>G 6901C>T), AGA71AAA (6903G>A), GGG73GCA (6909G>C 6910G>A), GTG74ATG (6911G>A), TTG75CTC (6914T>C 6916G>C), ACC76CTA (6917A>C 6918C>T 6919C>A), GCG77GAG (6921C>A), GGC78GGT (6925C>T), GGC79GGA (6928C>A), TCC81TCT (6934C>T), CCC82GAG (6935C>G 6936C>A 6937C>G), ACT83ACA (6940T>A), GCA86GCC (6949A>C), AGA87CGT (6950A>C 6952A>T), GTT90ATC (6959G>A 6961T>C), AAT91AAC (6964T>C), GCA92GCC (6967A>C), CCT93CCC (6970T>C), ACT95ACA (6976T>A), CAG96AAA (6977C>A 6979G>A), GTT97ACT (6980G>A 6981T>C), TTA98TTG (6985A>G), AAT101AGC (6993A>G 6994T>C), ACC103ACA (7000C>A), AGA104AGG (7003A>G), TAT105TAC (7006T>C), GCC107GCT (7012C>T), GGA109GAT (7017G>A 7018A>T), GCC110GCT (7021C>T), ACG111AGG (7023C>G), AAA112ACT (7026A>C 7027A>T), ACC113ACA (7030C>A), ACT114ACA (7033T>A), ACT115TAT (7034A>T 7035C>A), TTC116AAT (7037T>A 7038T>A 7039C>T), TCC117GCA (7040T>G 7042C>A), GGT118GGC (7045T>C), GGA119CGC (7046G>C 7048A>C), TTC120TTT (7051C>T), ACC121TCC (7052A>T), AAT122ACC (7056A>C 7057T>C), GTT123CCC (7058G>C 7059T>C 7060T>C), TCT124CAA (7061T>C 7062C>A 7063T>A), CAT125CCC (7065A>C 7066T>C), GCC126TCG (7067G>T 7069C>G), AGA127GGG (7070A>G 7072A>G), ACT128GCA (7073A>G 7075T>A), GTC129CTA (7076G>C 7078C>A), GAC130CCA (7079G>C 7080A>C 7081C>A), CTG131GGA (7082C>G 7083T>G 7084G>A), ACC132AGA (7086C>G 7087C>A), AAG133GCT (7088A>G 7089A>C 7090G>T), AAG134AAT (7093G>T), ACA135CTT (7094A>C 7095C>T 7096A>T), TCA136AGG (7097T>A 7098C>G 7099A>G), GCC137GCT (7102C>T), ACA138ACT (7105A>T), CCA139GTC (7106C>G 7107C>T 7108A>C), GCT140CCC (7109G>C 7111T>C), CCT141GCC (7112C>G 7114T>C), GCG142CGG (7115G>C 7116C>G), CCT143GGT (7118C>G 7119C>G), GTT144TCC (7121G>T 7122T>C 7123T>C), AGA146AGC (7129A>C), CCT147ACG (7130C>A 7132T>G), AGC148TTC (7133A>T 7134G>T), GTC150AAC (7139G>A 7140T>A), GCC151TCT (7142G>T 7144C>T), ACA153ATT (7149C>T 7150A>T), GTC154GCT (7152T>C 7153C>T), TCC155ACT (7154T>A 7156C>T), ACC156TCT (7157A>T 7159C>T), CGC157GTG (7160C>G 7161G>T 7162C>G), TCA158TAT (7164C>A 7165A>T), ACC159TCA (7166A>T 7168C>A), TTG160AAT (7169T>A 7170T>A 7171G>T), ATT161CAA (7172A>C 7173T>A 7174T>A), AGC162ACC (7176G>C), GGG163ACC (7178G>A 7179G>C 7180G>C), TCT164TCA (7183T>A), TCC165ACG (7184T>A 7186C>G), AAT166AGA (7188A>G 7189T>A), CCT167CTT (7191C>T), TCT168GGT (7193T>G 7194C>G), TTA170ACA (7199T>A 7200T>C), AGG172GGT (7205A>G 7207G>T), AGT173TCT (7208A>T 7209G>C), TCT174GGT (7211T>G 7212C>G), TCT175ACC (7214T>A 7216T>C), GTT177GTC (7222T>C), TCT178TCG (7225T>G), TCT179AGC (7226T>A 7227C>G 7228T>C), CAA180CTC (7230A>T 7231A>C), CCC181CCG (7234C>G), ACC182_TCC183del (7235_7240delACCTCC), TCC184TCA (7243C>A), TCT185ACT (7244T>A), TCT186GCA (7247T>G 7249T>A), CGG187AGG (7250C>A), ACC188ACT (7255C>T), AGT189AGG (7258T>G), GAG190AGC (7259G>A 7260A>G 7261G>C), GTG192GTT (7267G>T), CGC193GAG (7268C>G 7269G>A 7270C>G), AGC194GAT (7271A>G 7272G>A 7273C>T), AAC196AAT (7279C>T), GCA198AAT (7283G>A 7284C>A 7285A>T), CTG199TTG (7286C>T), GAG200TCA (7289G>T 7290A>C 7291G>A), TAC202TTC (7296A>T), GGA205GGG (7306A>G), GCG206GCC (7309G>C), CTA207CAT (7311T>A 7312A>T), CGC208AAC (7313C>A 7314G>A), ACA209ATC (7317C>T 7318A>C), GCC210TCG (7319G>T 7321C>G), TAT211TTT (7323A>T), GTG212GTC (7327G>C), ACG213ACC (7330G>C), CCT214CCA (7333T>A), CCC215CCA (7336C>A), AGT217AGC (7342T>C), GCT219TCC (7346G>T 7348T>C), AGT221AGC (7354T>C), AAT222CAA (7355A>C 7357T>A), CCA229CCC (7378A>C), GAG231GAA (7384G>A), ACA237ACT (7402A>T), TCT238GGC (7403T>G 7404C>G 7405T>C), GCA239GCT (7408A>T), TTT240TTC (7411T>C), ACC242ACG (7417C>G), CAC243CGC (7419A>G), AGA244AGG (7423A>G), CAA245CAG (7426A>G), CCG246CCT (7429G>T), CTA247CTC (7432A>C), CAT250CAC (7441T>C), CTC251ATT (7442C>A 7444C>T), CGT252CGC (7447T>C), CGG253AAG (7448C>A 7449G>A), AGA254CGA (7451A>C), CAA258CGG (7464A>G 7465A>G), GTT259GTG (7468T>G), TAG260TAA (7471G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43