Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus YPM22

Assembly

9631 (49 contig(s))
9.8
882
56.91 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus YPM22 (Taxonomy ID: 2956278)
99.7404
98.5338
10
39

Alignment

19162.0 (NT) + 20059.0 (AA) = 39221.0
99.662
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT1343167230.3%1916299.5%9631 (100%)9606 (99.7%)0/0
Mutations:780G>A, 843G>A, 946T>G, 8404C>T, 14176A>G, 14178T>A, 14189A>T, 14291A>G, 15772C>T, 15787C>T, 15790A>G, 16334A>G, 16365C>G, 16370C>T, 16528G>A, 18060A>T, 18125T>G, 18875C>T, 25600C>G, 25620T>C, 25662C>T, 25728A>G, 25788T>C, 26604G>A, 26606C>T
CDS
4665148.0%251595.9%365 (100%)358 (98.1%)0/0/2/00
Protein mutations:S316A (946T>G)
Codon mutations:GCG260GCA (780G>A), GAG281GAA (843G>A), TCA316GCA (946T>G)
71988.1%21495.1%28 (100%)27 (96.4%)0/0/0/00
20257824.7%97499.2%146 (100%)145 (99.3%)0/0/0/00
122960.7%114596.7%173 (100%)170 (98.3%)0/0/0/00
2331947.5%110698.2%170 (100%)168 (98.8%)0/0/0/00
6724829.4%49798.2%73 (100%)72 (98.6%)0/0/0/01
9917042.4%49598.8%72 (100%)72 (100%)0/0/0/01
12841.2%18597.4%28 (100%)27 (96.4%)0/0/0/00
459128.3%36597.9%47 (100%)46 (97.9%)0/0/0/00
314253.5%46698.1%76 (100%)76 (100%)0/0/0/01
13423.9%179100%34 (100%)34 (100%)0/0/0/00
305345.3%17495.6%24 (100%)24 (100%)0/0/0/01
110553.2%54297.7%83 (100%)81 (97.6%)0/0/0/00
17321218.9%27897.2%40 (100%)39 (97.5%)0/0/0/01
Protein mutations:S209G (14176A>G 14178T>A)
Codon mutations:AGT209GGA (14176A>G 14178T>A)
19581.9%61899.2%95 (100%)94 (98.9%)0/0/0/00
5617668.8%902100%121 (100%)121 (100%)0/0/0/01
191256.1%341598.3%512 (100%)505 (98.6%)0/0/0/01
Protein mutations:L131V (16365C>G), S185N (16528G>A), S696C (18060A>T)
Codon mutations:GGA120GGG (16334A>G), CTC131GTC (16365C>G), AGC132AGT (16370C>T), AGC185AAC (16528G>A), AGT696TGT (18060A>T), GGT717GGG (18125T>G)
117671.0%89598.6%125 (100%)124 (99.2%)0/0/0/01
126012.8%36398.9%51 (100%)50 (98.0%)0/0/0/00
12817326.6%304100%46 (100%)46 (100%)0/0/0/01
139287.0%466100%80 (100%)80 (100%)0/0/0/01
179929.5%153496.2%241 (100%)235 (97.5%)0/0/0/00
19358.1%59692.5%93 (100%)90 (96.8%)0/0/1/00
Protein mutations:P29A (25600C>G)
Codon mutations:CCG29GCG (25600C>G), GGT35GGC (25620T>C), AAC49AAT (25662C>T), AGA71AGG (25728A>G), GGT91GGC (25788T>C)
5025035.8%89298.0%139 (100%)137 (98.6%)0/0/0/00
Protein mutations:V204I (26604G>A 26606C>T)
Codon mutations:GTC204ATT (26604G>A 26606C>T)
15575.3%431100%55 (100%)55 (100%)0/0/0/00
12128.0%13896.5%21 (100%)20 (95.2%)0/0/0/00
37962.4%37096.4%63 (100%)61 (96.8%)0/0/0/00
Proteins
4665148.0%251595.9%365 (100%)358 (98.1%)0/0/2/00
Protein mutations:S316A (946T>G)
Codon mutations:GCG260GCA (780G>A), GAG281GAA (843G>A), TCA316GCA (946T>G)
71988.1%21495.1%28 (100%)27 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
20257824.7%97499.2%146 (100%)145 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
122960.7%114596.7%173 (100%)170 (98.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
2331947.5%110698.2%170 (100%)168 (98.8%)0/0/0/00
Protein mutations:none
Codon mutations:GGC69GGT (8404C>T)
6724829.4%49798.2%73 (100%)72 (98.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
9917042.4%49598.8%72 (100%)72 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
12841.2%18597.4%28 (100%)27 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
459128.3%36597.9%47 (100%)46 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
314253.5%46698.1%76 (100%)76 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13423.9%179100%34 (100%)34 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
305345.3%17495.6%24 (100%)24 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
110553.2%54297.7%83 (100%)81 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
17321218.9%27897.2%40 (100%)39 (97.5%)0/0/0/01
Protein mutations:S209G (14176A>G 14178T>A)
Codon mutations:AGT209GGA (14176A>G 14178T>A)
19581.9%61899.2%95 (100%)94 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:ACA2ACT (14189A>T), TCA36TCG (14291A>G)
5617668.8%902100%121 (100%)121 (100%)0/0/0/01
Protein mutations:none
Codon mutations:TTC112TTT (15772C>T), GGC117GGT (15787C>T), GTA118GTG (15790A>G)
191256.1%341598.3%512 (100%)505 (98.6%)0/0/0/01
Protein mutations:L131V (16365C>G), S185N (16528G>A), S696C (18060A>T)
Codon mutations:GGA120GGG (16334A>G), CTC131GTC (16365C>G), AGC132AGT (16370C>T), AGC185AAC (16528G>A), AGT696TGT (18060A>T), GGT717GGG (18125T>G)
117671.0%89598.6%125 (100%)124 (99.2%)0/0/0/01
Protein mutations:none
Codon mutations:GAC54GAT (18875C>T)
126012.8%36398.9%51 (100%)50 (98.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
12817326.6%304100%46 (100%)46 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
139287.0%466100%80 (100%)80 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
179929.5%153496.2%241 (100%)235 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
19358.1%59692.5%93 (100%)90 (96.8%)0/0/1/00
Protein mutations:P29A (25600C>G)
Codon mutations:CCG29GCG (25600C>G), GGT35GGC (25620T>C), AAC49AAT (25662C>T), AGA71AGG (25728A>G), GGT91GGC (25788T>C)
5025035.8%89298.0%139 (100%)137 (98.6%)0/0/0/00
Protein mutations:V204I (26604G>A 26606C>T)
Codon mutations:GTC204ATT (26604G>A 26606C>T)
15575.3%431100%55 (100%)55 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
12128.0%13896.5%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
37962.4%37096.4%63 (100%)61 (96.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43