Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia virus Lambda_1H12

Assembly

13390 (51 contig(s))
5.8
739
47.68 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia virus Lambda_1H12 (Taxonomy ID: 2686049)
99.9477
99.2115
20
73

Alignment

26752.0 (NT) + 28207.0 (AA) = 54959.0
99.9236
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT79544620028.7%2675299.9%13390 (100%)13383 (99.9%)0/0
Mutations:15533C>A, 15565A>G, 15641T>C, 15704C>A, 15706T>C, 15749T>A, 27984C>T
CDS
1161182.5%17100%3 (100%)3 (100%)0/0/0/01
119338.3%45193.6%74 (100%)73 (98.6%)0/0/0/01
1132100%87897.3%132 (100%)131 (99.2%)0/0/1/01
13213.0%236100%32 (100%)32 (100%)0/0/0/00
11113114.5%13290.4%21 (100%)20 (95.2%)0/0/0/00
9811011.8%7690.5%13 (100%)13 (100%)0/0/0/01
111951.1%81699.4%119 (100%)118 (99.2%)0/0/0/00
6624870.6%139798.9%175 (100%)174 (99.4%)0/0/0/01
119194.2%114398.9%180 (100%)178 (98.9%)0/0/0/01
1105046.6%358998.3%541 (100%)535 (98.9%)0/0/0/00
Protein mutations:K15R (15565A>G), F62S (15706T>C)
Codon mutations:GGC4GGA (15533C>A), AAG15AGG (15565A>G), GAT40GAC (15641T>C), ATC61ATA (15704C>A), TTC62TCC (15706T>C), ACT76ACA (15749T>A)
14122312.3%43097.7%83 (100%)82 (98.8%)0/0/0/00
199380.6%52699.2%75 (100%)75 (100%)0/0/0/01
19881.6%64198.5%80 (100%)79 (98.8%)0/0/0/01
5828680.1%149999.7%229 (100%)229 (100%)0/0/0/01
121869.9%133798.6%200 (100%)199 (99.5%)0/0/0/00
1276100%1794100%276 (100%)276 (100%)0/0/0/01
3930579.3%164498.7%242 (100%)241 (99.6%)0/0/0/01
547630.3%15295.0%23 (100%)23 (100%)0/0/0/01
125395.3%163099.2%241 (100%)240 (99.6%)0/0/0/01
152100%335100%52 (100%)52 (100%)0/0/0/01
136882.9%221498.7%316 (100%)313 (99.1%)0/0/0/00
117987.3%47395.9%69 (100%)69 (100%)0/0/0/01
120944.7%76098.4%117 (100%)116 (99.1%)0/0/0/00
89961.6%41894.4%61 (100%)61 (100%)0/0/0/01
18493.3%528100%84 (100%)84 (100%)0/0/0/00
327636.6%29795.8%45 (100%)44 (97.8%)0/0/0/00
123628.0%57696.5%84 (100%)82 (97.6%)0/0/0/00
2292342.6%26100%6 (100%)6 (100%)0/0/0/01
197100%623100%97 (100%)97 (100%)0/0/0/01
13314.3%13693.2%21 (100%)20 (95.2%)0/0/0/00
5717143.2%55096.8%76 (100%)75 (98.7%)0/0/0/00
165950.8%21593.1%30 (100%)30 (100%)0/0/0/01
17969.3%58799.2%79 (100%)78 (98.7%)0/0/0/00
254329.2%11883.1%19 (100%)18 (94.7%)0/0/0/00
204420.7%17995.7%25 (100%)25 (100%)0/0/0/00
165632.5%30694.2%41 (100%)40 (97.6%)0/0/0/00
3516634.3%42598.2%57 (100%)56 (98.2%)0/0/0/01
114392.9%91399.0%143 (100%)142 (99.3%)0/0/0/00
12424.5%14096.6%24 (100%)23 (95.8%)0/0/0/00
Proteins
1161182.5%17100%3 (100%)3 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
119338.3%45193.6%74 (100%)73 (98.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
1132100%87897.3%132 (100%)131 (99.2%)0/0/1/01
Protein mutations:none
Codon mutations:none
13213.0%236100%32 (100%)32 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
11113114.5%13290.4%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
9811011.8%7690.5%13 (100%)13 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
111951.1%81699.4%119 (100%)118 (99.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
6624870.6%139798.9%175 (100%)174 (99.4%)0/0/0/01
Protein mutations:none
Codon mutations:none
119194.2%114398.9%180 (100%)178 (98.9%)0/0/0/01
Protein mutations:none
Codon mutations:none
1105046.6%358998.3%541 (100%)535 (98.9%)0/0/0/00
Protein mutations:K15R (15565A>G), F62S (15706T>C)
Codon mutations:GGC4GGA (15533C>A), AAG15AGG (15565A>G), GAT40GAC (15641T>C), ATC61ATA (15704C>A), TTC62TCC (15706T>C), ACT76ACA (15749T>A)
14122312.3%43097.7%83 (100%)82 (98.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
199380.6%52699.2%75 (100%)75 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19881.6%64198.5%80 (100%)79 (98.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
5828680.1%149999.7%229 (100%)229 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
121869.9%133798.6%200 (100%)199 (99.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
1276100%1794100%276 (100%)276 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
3930579.3%164498.7%242 (100%)241 (99.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
547630.3%15295.0%23 (100%)23 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
125395.3%163099.2%241 (100%)240 (99.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
152100%335100%52 (100%)52 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
136882.9%221498.7%316 (100%)313 (99.1%)0/0/0/00
Protein mutations:none
Codon mutations:CCG187CCA (27984C>T)
117987.3%47395.9%69 (100%)69 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
120944.7%76098.4%117 (100%)116 (99.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
89961.6%41894.4%61 (100%)61 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
18493.3%528100%84 (100%)84 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
327636.6%29795.8%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
123628.0%57696.5%84 (100%)82 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
2292342.6%26100%6 (100%)6 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
197100%623100%97 (100%)97 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13314.3%13693.2%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
5717143.2%55096.8%76 (100%)75 (98.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
165950.8%21593.1%30 (100%)30 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
17969.3%58799.2%79 (100%)78 (98.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
254329.2%11883.1%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
204420.7%17995.7%25 (100%)25 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
165632.5%30694.2%41 (100%)40 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
3516634.3%42598.2%57 (100%)56 (98.2%)0/0/0/01
Protein mutations:none
Codon mutations:none
114392.9%91399.0%143 (100%)142 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
12424.5%14096.6%24 (100%)23 (95.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43