Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus P24C9

Assembly

11837 (60 contig(s))
5.1
569
36.71 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus P24C9 (Taxonomy ID: 2844221)
99.9662
98.8898
21
42

Alignment

23658.0 (NT) + 24750.0 (AA) = 48408.0
99.967
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT1092913636.8%2365899.9%11837 (100%)11833 (99.9%)0/0
Mutations:9824C>T, 17344G>A, 17473C>T, 25808A>G
CDS
1163459.9%20890.0%34 (100%)33 (97.1%)0/0/0/01
148124.7%103696.5%146 (100%)143 (97.9%)0/0/0/00
18628.0%61399.2%86 (100%)85 (98.8%)0/0/0/00
3628236.0%86595.8%129 (100%)127 (98.4%)0/0/0/00
6921860.5%97497.3%150 (100%)149 (99.3%)0/0/0/00
7517050.6%59698.3%86 (100%)86 (100%)0/0/0/01
168100%446100%68 (100%)68 (100%)0/0/0/01
19452.1%31998.5%49 (100%)48 (98.0%)0/0/0/01
116683.1%98198.8%138 (100%)137 (99.3%)0/0/0/01
114297.9%87199.4%139 (100%)139 (100%)0/0/0/01
1142100%913100%142 (100%)142 (100%)0/0/0/01
153100%375100%53 (100%)53 (100%)0/0/0/01
114860.3%64895.4%94 (100%)92 (97.9%)0/0/0/00
7314347.0%47797.5%71 (100%)70 (98.6%)0/0/0/00
120843.4%59297.7%92 (100%)91 (98.9%)0/0/0/00
2322518.2%34295.5%55 (100%)53 (96.4%)0/0/0/00
1117771.8%92195.1%127 (100%)125 (98.4%)0/0/1/01
185128.0%169297.3%258 (100%)254 (98.4%)0/0/0/00
13539761.2%165498.7%243 (100%)241 (99.2%)0/0/0/01
4016462.2%69698.4%102 (100%)102 (100%)0/0/0/01
539243.5%23797.9%40 (100%)40 (100%)0/0/0/01
152100%359100%52 (100%)52 (100%)0/0/0/01
181621.8%106492.6%178 (100%)173 (97.2%)0/0/0/01
18521.9%21992.8%35 (100%)34 (97.1%)0/0/0/00
6822030.2%78998.3%117 (100%)117 (100%)0/0/0/00
14156.2%337100%41 (100%)41 (100%)0/0/0/00
133876.6%179499.3%259 (100%)258 (99.6%)0/0/0/01
189100%610100%89 (100%)89 (100%)0/0/0/01
18588.2%51397.2%75 (100%)74 (98.7%)0/0/0/01
157100%381100%57 (100%)57 (100%)0/0/0/01
116760.5%69097.6%101 (100%)99 (98.0%)0/0/0/01
57586.7%40797.4%65 (100%)64 (98.5%)0/0/0/01
12726.7%157100%27 (100%)27 (100%)0/0/0/00
657514.7%6992.0%11 (100%)11 (100%)0/0/0/01
15440.2%23496.3%37 (100%)36 (97.3%)0/0/0/00
5163032.8%167196.4%247 (100%)242 (98.0%)0/0/0/00
Proteins
1163459.9%20890.0%34 (100%)33 (97.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
148124.7%103696.5%146 (100%)143 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
18628.0%61399.2%86 (100%)85 (98.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
3628236.0%86595.8%129 (100%)127 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
6921860.5%97497.3%150 (100%)149 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
7517050.6%59698.3%86 (100%)86 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
168100%446100%68 (100%)68 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19452.1%31998.5%49 (100%)48 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
116683.1%98198.8%138 (100%)137 (99.3%)0/0/0/01
Protein mutations:none
Codon mutations:none
114297.9%87199.4%139 (100%)139 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1142100%913100%142 (100%)142 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
153100%375100%53 (100%)53 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
114860.3%64895.4%94 (100%)92 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
7314347.0%47797.5%71 (100%)70 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
120843.4%59297.7%92 (100%)91 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:ACC136..T (9824C>T)
2322518.2%34295.5%55 (100%)53 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
1117771.8%92195.1%127 (100%)125 (98.4%)0/0/1/01
Protein mutations:none
Codon mutations:none
185128.0%169297.3%258 (100%)254 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
13539761.2%165498.7%243 (100%)241 (99.2%)0/0/0/01
Protein mutations:none
Codon mutations:GGG160GGA (17344G>A), GCC203GCT (17473C>T)
4016462.2%69698.4%102 (100%)102 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
539243.5%23797.9%40 (100%)40 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
152100%359100%52 (100%)52 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
181621.8%106492.6%178 (100%)173 (97.2%)0/0/0/01
Protein mutations:none
Codon mutations:none
18521.9%21992.8%35 (100%)34 (97.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
6822030.2%78998.3%117 (100%)117 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
14156.2%337100%41 (100%)41 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
133876.6%179499.3%259 (100%)258 (99.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
189100%610100%89 (100%)89 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
18588.2%51397.2%75 (100%)74 (98.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
157100%381100%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116760.5%69097.6%101 (100%)99 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:ACA46ACG (25808A>G)
57586.7%40797.4%65 (100%)64 (98.5%)0/0/0/01
Protein mutations:none
Codon mutations:none
12726.7%157100%27 (100%)27 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
657514.7%6992.0%11 (100%)11 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15440.2%23496.3%37 (100%)36 (97.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
5163032.8%167196.4%247 (100%)242 (98.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43