Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage IME10

Assembly

4999 (27 contig(s))
9.2
435
28.07 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Enterobacteria phage IME10 (Taxonomy ID: 1090133)
99.68
99.1659
2
27

Alignment

9928.0 (NT) + 7236.0 (AA) = 17164.0
99.5938
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT34553894012.6%992899.3%4999 (99.9%)4984 (99.7%)1/0
Mutations:7811_7812insA, 16072T>C, 16243G>A, 16275T>G, 16281T>C, 16414A>C, 37517T>C, 37589C>A, 37592A>G, 37667T>C, 38267C>T, 38492T>A, 38495C>T, 38507T>G, 38570C>T, 38714G>T
CDS
1217100%1490100%217 (100%)217 (100%)0/0/0/01
12318.9%147100%23 (100%)23 (100%)0/0/0/00
689113.2%21098.1%24 (100%)24 (100%)0/0/0/00
11411.5%94100%14 (100%)14 (100%)0/0/0/00
1108100%691100%108 (100%)108 (100%)0/0/0/01
112022.6%23587.4%36 (100%)34 (94.4%)0/0/0/00
913230.8%30093.5%45 (100%)44 (97.8%)0/0/0/00
3198.4%9692.3%17 (100%)16 (94.1%)0/0/0/00
22046611.8%368100%56 (100%)56 (100%)0/0/0/00
6123368.4%97496.0%160 (100%)157 (98.1%)0/0/0/00
468626.8%32697.6%41 (100%)41 (100%)0/0/0/00
124213.4%20398.1%31 (100%)30 (96.8%)0/0/0/00
138479.5%210299.3%307 (100%)306 (99.7%)0/0/0/00
Proteins
1217100%1490100%217 (100%)217 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
12318.9%147100%23 (100%)23 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
689113.2%21098.1%24 (100%)24 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
11411.5%94100%14 (100%)14 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1108100%691100%108 (100%)108 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
112022.6%23587.4%36 (100%)34 (94.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
913230.8%30093.5%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
3198.4%9692.3%17 (100%)16 (94.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
22046611.8%368100%56 (100%)56 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
6123368.4%97496.0%160 (100%)157 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
468626.8%32697.6%41 (100%)41 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
124213.4%20398.1%31 (100%)30 (96.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
138479.5%210299.3%307 (100%)306 (99.7%)0/0/0/00
Protein mutations:none
Codon mutations:GTG31GTA (38570C>T), GTA52GTC (38507T>G), CCG56CCA (38495C>T), CTA57CTT (38492T>A), GAG132GAA (38267C>T), ACA332ACG (37667T>C), CGT357CGC (37592A>G), GGG358GGT (37589C>A), GAA382GAG (37517T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43