Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Salmonella phage 118970_sal3

Assembly

6295 (23 contig(s))
4.9
277
17.87 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage 118970_sal3 (Taxonomy ID: 1813771)
99.7299
99.4867
11
135

Alignment

12522.0 (NT) + 13635.0 (AA) = 26157.0
99.6875
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT14773198.1%1252299.5%6295 (100%)6278 (99.7%)0/0
Mutations:38160G>C, 38166A>G, 38208C>T, 38897G>T, 39041T>G, 39065T>C, 39134C>T, 39206C>T, 39659C>A, 39707T>C, 39715C>A, 39819C>T, 39824G>A, 39860C>T, 40312C>T, 40323A>T, 40413T>G
CDS
28459.5%369100%50 (100%)50 (100%)0/0/0/01
19084.4%48996.3%76 (100%)74 (97.4%)0/0/0/01
159100%410100%59 (100%)59 (100%)0/0/0/01
15696.4%378100%54 (100%)54 (100%)0/0/0/01
11129735.1%75996.8%108 (100%)108 (100%)0/0/0/00
557711.9%166100%23 (100%)23 (100%)0/0/0/00
184562.2%170100%28 (100%)28 (100%)0/0/0/01
124095.6%170199.4%240 (100%)239 (99.6%)0/0/0/00
154165.9%23198.3%27 (100%)27 (100%)0/0/0/01
116397.6%108298.8%161 (100%)160 (99.4%)0/0/0/00
555494.2%368098.9%522 (100%)519 (99.4%)0/0/0/01
Protein mutations:A409D (39715C>A)
Codon mutations:GCG136GCT (38897G>T), GCT184GCG (39041T>G), CAT192CAC (39065T>C), GCC215GCT (39134C>T), AAC239AAT (39206C>T), CGC390CGA (39659C>A), ACT406ACC (39707T>C), GCT409GAT (39715C>A), CTG444TTG (39819C>T), TCG445TCA (39824G>A), ACC457ACT (39860C>T)
159100%40097.6%59 (100%)58 (98.3%)0/0/0/01
Protein mutations:Q52L (40323A>T)
Codon mutations:GAC48GAT (40312C>T), CAG52CTG (40323A>T)
156100%386100%56 (100%)56 (100%)0/0/0/01
3730547.0%108797.0%151 (100%)149 (98.7%)0/0/0/00
25459.7%14494.7%21 (100%)21 (100%)0/0/0/00
3223466.2%150100%25 (100%)25 (100%)0/0/0/00
3083307.0%140100%23 (100%)23 (100%)0/0/0/01
123392.8%1641100%233 (100%)233 (100%)0/0/0/00
124374.4%25297.7%32 (100%)32 (100%)0/0/0/01
Proteins
28459.5%369100%50 (100%)50 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19084.4%48996.3%76 (100%)74 (97.4%)0/0/0/01
Protein mutations:none
Codon mutations:none
159100%410100%59 (100%)59 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15696.4%378100%54 (100%)54 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
11129735.1%75996.8%108 (100%)108 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
557711.9%166100%23 (100%)23 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
184562.2%170100%28 (100%)28 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
124095.6%170199.4%240 (100%)239 (99.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
154165.9%23198.3%27 (100%)27 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116397.6%108298.8%161 (100%)160 (99.4%)0/0/0/00
Protein mutations:none
Codon mutations:CTG78CTC (38160G>C), GTA80GTG (38166A>G), GCC94GCT (38208C>T)
555494.2%368098.9%522 (100%)519 (99.4%)0/0/0/01
Protein mutations:A409D (39715C>A)
Codon mutations:GCG136GCT (38897G>T), GCT184GCG (39041T>G), CAT192CAC (39065T>C), GCC215GCT (39134C>T), AAC239AAT (39206C>T), CGC390CGA (39659C>A), ACT406ACC (39707T>C), GCT409GAT (39715C>A), CTG444TTG (39819C>T), TCG445TCA (39824G>A), ACC457ACT (39860C>T)
159100%40097.6%59 (100%)58 (98.3%)0/0/0/01
Protein mutations:Q52L (40323A>T)
Codon mutations:GAC48GAT (40312C>T), CAG52CTG (40323A>T)
156100%386100%56 (100%)56 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
3730547.0%108797.0%151 (100%)149 (98.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
25459.7%14494.7%21 (100%)21 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
3223466.2%150100%25 (100%)25 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
3083307.0%140100%23 (100%)23 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
123392.8%1641100%233 (100%)233 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
124374.4%25297.7%32 (100%)32 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43