Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Lambdavirus HK629

Assembly

7228 (45 contig(s))
4.8
350
22.58 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Lambdavirus HK629 (Taxonomy ID: 2169968)
99.9308
98.6942
12
69

Alignment

14436.0 (NT) + 16012.0 (AA) = 30448.0
99.9212
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT77674714115.3%1443699.9%7228 (100%)7223 (99.9%)0/0
Mutations:22188G>A, 22270G>A, 22288G>A, 41657T>C, 42276C>T
CDS
1161182.5%17100%3 (100%)3 (100%)0/0/0/01
116637.8%47397.7%73 (100%)71 (97.3%)0/0/0/00
8410113.6%11193.3%18 (100%)17 (94.4%)0/0/0/00
11815414.4%23697.9%37 (100%)36 (97.3%)0/0/0/00
549328.4%28094.0%40 (100%)39 (97.5%)0/0/0/00
48584116.4%87299.1%140 (100%)139 (99.3%)0/0/0/00
515963.1%102298.3%147 (100%)146 (99.3%)0/0/0/00
520060.0%945100%120 (100%)120 (100%)0/0/0/01
116065.6%94798.0%147 (100%)145 (98.6%)0/0/0/00
191039.1%289397.2%443 (100%)437 (98.6%)0/0/0/00
2462767.7%14696.7%31 (100%)30 (96.8%)0/0/0/00
2873159.2%180100%29 (100%)29 (100%)0/0/0/01
118891.3%123399.4%178 (100%)176 (98.9%)0/0/0/00
Protein mutations:S135N (22188G>A)
Codon mutations:AGC135AAC (22188G>A), TCG162TCA (22270G>A), AAG168AAA (22288G>A)
2972970.3%114.3%1 (100%)1 (100%)0/0/0/01
297345.5%32097.3%45 (100%)44 (97.8%)0/0/0/00
11518.8%8895.7%15 (100%)14 (93.3%)0/0/0/00
14072.7%26498.1%40 (100%)39 (97.5%)0/0/0/00
113773.7%69298.3%101 (100%)100 (99.0%)0/0/0/01
65668.9%37397.9%51 (100%)50 (98.0%)0/0/0/00
16721118.7%31695.5%45 (100%)44 (97.8%)0/0/0/00
69779.4%53296.0%77 (100%)76 (98.7%)0/0/0/01
1121100%831100%121 (100%)121 (100%)0/0/0/01
16561.5%266100%40 (100%)40 (100%)0/0/0/01
114375.1%91398.6%130 (100%)128 (98.5%)0/0/0/00
789819.4%12796.9%21 (100%)20 (95.2%)0/0/0/00
1915528.9%30795.0%46 (100%)44 (95.7%)0/0/0/00
2415469.5%69399.3%107 (100%)106 (99.1%)0/0/0/01
46195.1%44499.1%58 (100%)58 (100%)0/0/0/01
649835.7%22896.6%35 (100%)35 (100%)0/0/0/01
14417819.7%262100%35 (100%)35 (100%)0/0/0/01
Proteins
1161182.5%17100%3 (100%)3 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116637.8%47397.7%73 (100%)71 (97.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
8410113.6%11193.3%18 (100%)17 (94.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
11815414.4%23697.9%37 (100%)36 (97.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
549328.4%28094.0%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
48584116.4%87299.1%140 (100%)139 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
515963.1%102298.3%147 (100%)146 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
520060.0%945100%120 (100%)120 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116065.6%94798.0%147 (100%)145 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
191039.1%289397.2%443 (100%)437 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
2462767.7%14696.7%31 (100%)30 (96.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
2873159.2%180100%29 (100%)29 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
118891.3%123399.4%178 (100%)176 (98.9%)0/0/0/00
Protein mutations:S135N (22188G>A)
Codon mutations:AGC135AAC (22188G>A), TCG162TCA (22270G>A), AAG168AAA (22288G>A)
2972970.3%114.3%1 (100%)1 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
297345.5%32097.3%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
11518.8%8895.7%15 (100%)14 (93.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
14072.7%26498.1%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
113773.7%69298.3%101 (100%)100 (99.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
65668.9%37397.9%51 (100%)50 (98.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
16721118.7%31695.5%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
69779.4%53296.0%77 (100%)76 (98.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
1121100%831100%121 (100%)121 (100%)0/0/0/01
Protein mutations:none
Codon mutations:CTT45CTC (41657T>C)
16561.5%266100%40 (100%)40 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
114375.1%91398.6%130 (100%)128 (98.5%)0/0/0/00
Protein mutations:none
Codon mutations:GTC70GTT (42276C>T)
789819.4%12796.9%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
1915528.9%30795.0%46 (100%)44 (95.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
2415469.5%69399.3%107 (100%)106 (99.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
46195.1%44499.1%58 (100%)58 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
649835.7%22896.6%35 (100%)35 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
14417819.7%262100%35 (100%)35 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43