NGS Details (SRR3458562_Metagenome_example): Peduovirus P22H4

Assembly

8269 (46 contig(s))
4.2
338
21.81 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus P22H4 (Taxonomy ID: 2844218)
99.9395
98.6651
15
43

Alignment

16518.0 (NT) + 17190.0 (AA) = 33708.0
99.9229
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT1392810426.4%1651899.9%8269 (100%)8264 (99.9%)0/0
Mutations:879C>T, 22366C>T, 22470G>A, 22617G>A, 27243T>A
CDS
424712.8%61100%6 (100%)6 (100%)0/0/0/01
4334544.1%104792.9%152 (100%)147 (96.7%)0/0/2/01
Protein mutations:V123I (879C>T)
Codon mutations:GTC123ATC (879C>T)
4144343.6%163100%21 (100%)21 (100%)0/0/0/00
15130715.0%30994.8%46 (100%)45 (97.8%)0/0/0/01
126568.2%161798.7%244 (100%)243 (99.6%)0/0/0/00
7322050.4%82799.4%125 (100%)125 (100%)0/0/0/00
75227.1%32497.9%46 (100%)45 (97.8%)0/0/0/00
649433.0%21298.1%31 (100%)31 (100%)0/0/0/01
195.4%71100%9 (100%)9 (100%)0/0/0/00
38950.0%41794.1%71 (100%)69 (97.2%)0/0/0/00
327328.4%24396.8%42 (100%)41 (97.6%)0/0/0/00
11113113.5%13897.2%21 (100%)21 (100%)0/0/0/00
1731898.0%11293.3%17 (100%)16 (94.1%)0/0/0/00
9411619.8%14796.1%23 (100%)23 (100%)0/0/0/01
122737.3%71896.6%113 (100%)111 (98.2%)0/0/0/00
319737.9%54099.1%67 (100%)67 (100%)0/0/0/00
1611769.1%12996.3%16 (100%)16 (100%)0/0/0/01
2552806.5%19596.1%26 (100%)25 (96.2%)0/0/0/00
759219.6%10296.2%18 (100%)18 (100%)0/0/0/01
152100%359100%52 (100%)52 (100%)0/0/0/01
169126.1%127895.6%213 (100%)207 (97.2%)0/0/0/00
11616028.1%258100%45 (100%)45 (100%)0/0/0/01
138824.2%62398.1%94 (100%)94 (100%)0/0/0/01
16063.8%43396.4%60 (100%)58 (96.7%)0/0/0/00
Protein mutations:M10I (22470G>A)
Codon mutations:ATG10ATA (22470G>A), ACG59ACA (22617G>A)
133884.0%193197.0%284 (100%)281 (98.9%)0/0/0/01
189100%610100%89 (100%)89 (100%)0/0/0/01
162100%458100%62 (100%)62 (100%)0/0/0/01
15189.5%33198.8%51 (100%)50 (98.0%)0/0/0/00
314877.2%93498.2%129 (100%)128 (99.2%)0/0/0/00
197576.0%34797.7%57 (100%)57 (100%)0/0/0/01
11110.9%6188.4%11 (100%)10 (90.9%)0/0/0/00
337557.3%31598.7%43 (100%)43 (100%)0/0/0/01
12527.2%16397.6%25 (100%)24 (96.0%)0/0/0/00
3153431.2%171797.0%238 (100%)234 (98.3%)0/0/0/00
Proteins
424712.8%61100%6 (100%)6 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
4334544.1%104792.9%152 (100%)147 (96.7%)0/0/2/01
Protein mutations:V123I (879C>T)
Codon mutations:GTC123ATC (879C>T)
4144343.6%163100%21 (100%)21 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
15130715.0%30994.8%46 (100%)45 (97.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
126568.2%161798.7%244 (100%)243 (99.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
7322050.4%82799.4%125 (100%)125 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
75227.1%32497.9%46 (100%)45 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
649433.0%21298.1%31 (100%)31 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
195.4%71100%9 (100%)9 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
38950.0%41794.1%71 (100%)69 (97.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
327328.4%24396.8%42 (100%)41 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
11113113.5%13897.2%21 (100%)21 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1731898.0%11293.3%17 (100%)16 (94.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
9411619.8%14796.1%23 (100%)23 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
122737.3%71896.6%113 (100%)111 (98.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
319737.9%54099.1%67 (100%)67 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1611769.1%12996.3%16 (100%)16 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
2552806.5%19596.1%26 (100%)25 (96.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
759219.6%10296.2%18 (100%)18 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
152100%359100%52 (100%)52 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
169126.1%127895.6%213 (100%)207 (97.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
11616028.1%258100%45 (100%)45 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
138824.2%62398.1%94 (100%)94 (100%)0/0/0/01
Protein mutations:none
Codon mutations:CTG370TTG (22366C>T)
16063.8%43396.4%60 (100%)58 (96.7%)0/0/0/00
Protein mutations:M10I (22470G>A)
Codon mutations:ATG10ATA (22470G>A), ACG59ACA (22617G>A)
133884.0%193197.0%284 (100%)281 (98.9%)0/0/0/01
Protein mutations:none
Codon mutations:none
189100%610100%89 (100%)89 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
162100%458100%62 (100%)62 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15189.5%33198.8%51 (100%)50 (98.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
314877.2%93498.2%129 (100%)128 (99.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
197576.0%34797.7%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
11110.9%6188.4%11 (100%)10 (90.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
337557.3%31598.7%43 (100%)43 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
12527.2%16397.6%25 (100%)24 (96.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
3153431.2%171797.0%238 (100%)234 (98.3%)0/0/0/00
Protein mutations:none
Codon mutations:TCT247TCA (27243T>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43