Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Byrnievirus HK97

Assembly

4171 (20 contig(s))
8.0
310
20.00 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Byrnievirus HK97 (Taxonomy ID: 37554)
99.5205
98.9147
8
61

Alignment

8262.0 (NT) + 8707.0 (AA) = 16969.0
99.4608
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT197303888810.5%826299.0%4171 (100%)4151 (99.5%)0/0
Mutations:24550G>A, 24643A>G, 25514T>C, 25520A>G, 25541C>T, 25560T>C, 25637T>C, 25667C>T, 25798T>C, 25874T>G, 25877C>T, 25898C>T, 25978C>A, 31546G>A, 31564T>A, 31606G>C, 31657T>C, 34394C>A, 34403C>T, 34487T>G
CDS
16521816.8%39195.8%54 (100%)53 (98.1%)0/0/0/00
8920356.7%747100%115 (100%)115 (100%)0/0/0/01
4210851.5%43596.9%67 (100%)66 (98.5%)0/0/0/00
119378.7%100397.3%159 (100%)156 (98.1%)0/0/0/00
528439.3%25496.6%33 (100%)33 (100%)0/0/0/01
275955.9%25496.6%33 (100%)33 (100%)0/0/0/01
1157100%114399.0%157 (100%)155 (98.7%)0/0/0/01
Protein mutations:I60V (25798T>C), D139G (25560T>C)
Codon mutations:CAG26CAA (25898C>T), GGG33GGA (25877C>T), ATA34ATC (25874T>G), ATT60GTT (25798T>C), GAG103GAA (25667C>T), TTA113TTG (25637T>C), GAT139GGT (25560T>C), GGG145GGA (25541C>T), AAT152AAC (25520A>G), GTA154GTG (25514T>C)
18520910.5%16489.1%25 (100%)24 (96.0%)0/0/0/00
336836.4%25997.0%36 (100%)36 (100%)0/0/0/00
16119613.1%260100%36 (100%)36 (100%)0/0/0/00
14842752.1%153597.3%239 (100%)237 (99.2%)0/0/0/00
10514729.3%29298.0%43 (100%)43 (100%)0/0/0/01
116525.0%26392.6%44 (100%)42 (95.5%)0/0/0/00
20624215.3%242100%37 (100%)37 (100%)0/0/0/01
19793.8%64797.1%91 (100%)90 (98.9%)0/0/0/01
16947.1%39299.0%57 (100%)57 (100%)0/0/0/00
8710719.6%125100%21 (100%)21 (100%)0/0/0/01
14327.0%30198.4%43 (100%)42 (97.7%)0/0/0/00
Proteins
16521816.8%39195.8%54 (100%)53 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
8920356.7%747100%115 (100%)115 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
4210851.5%43596.9%67 (100%)66 (98.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
119378.7%100397.3%159 (100%)156 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:AAT46AAC (24643A>G), AGC77AGT (24550G>A)
528439.3%25496.6%33 (100%)33 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
275955.9%25496.6%33 (100%)33 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1157100%114399.0%157 (100%)155 (98.7%)0/0/0/01
Protein mutations:I60V (25798T>C), D139G (25560T>C)
Codon mutations:CAG26CAA (25898C>T), GGG33GGA (25877C>T), ATA34ATC (25874T>G), ATT60GTT (25798T>C), GAG103GAA (25667C>T), TTA113TTG (25637T>C), GAT139GGT (25560T>C), GGG145GGA (25541C>T), AAT152AAC (25520A>G), GTA154GTG (25514T>C)
18520910.5%16489.1%25 (100%)24 (96.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
336836.4%25997.0%36 (100%)36 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
16119613.1%260100%36 (100%)36 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
14842752.1%153597.3%239 (100%)237 (99.2%)0/0/0/00
Protein mutations:none
Codon mutations:CGG287CGA (31546G>A), ATT293ATA (31564T>A), CTG307CTC (31606G>C), GAT324GAC (31657T>C)
10514729.3%29298.0%43 (100%)43 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116525.0%26392.6%44 (100%)42 (95.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
20624215.3%242100%37 (100%)37 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19793.8%64797.1%91 (100%)90 (98.9%)0/0/0/01
Protein mutations:none
Codon mutations:GGC10GGA (34394C>A), TGC13TGT (34403C>T), ACT41ACG (34487T>G)
16947.1%39299.0%57 (100%)57 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
8710719.6%125100%21 (100%)21 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
14327.0%30198.4%43 (100%)42 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43