Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Saikungvirus HK75

Assembly

3405 (16 contig(s))
8.6
286
18.45 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Saikungvirus HK75 (Taxonomy ID: 2169925)
99.6182
98.7759
8
58

Alignment

6758.0 (NT) + 7283.0 (AA) = 14041.0
99.5816
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT21020353259.3%675899.2%3405 (100%)3392 (99.6%)0/0
Mutations:22667T>G, 22685G>A, 22715A>G, 22846A>T, 32282A>G, 32288C>A, 32297C>T, 33243G>A, 33263C>T, 33299C>T, 33500G>A, 33512G>A, 33583G>A
CDS
1100100%79999.8%100 (100%)99 (99.0%)0/0/0/01
Protein mutations:S36T (22846A>T)
Codon mutations:TCG36ACG (22846A>T), CAT79CAC (22715A>G), TTC89TTT (22685G>A), GGA95GGC (22667T>G)
1531615.6%5786.4%9 (100%)9 (100%)0/0/0/01
159.1%2686.7%5 (100%)4 (80.0%)0/0/0/00
59861.2%39993.2%60 (100%)59 (98.3%)0/0/0/01
62752.4%159100%22 (100%)22 (100%)0/0/0/00
406526.3%18388.8%26 (100%)25 (96.2%)0/0/0/00
15376.8%33297.4%53 (100%)52 (98.1%)0/0/0/00
19065.7%61599.4%90 (100%)89 (98.9%)0/0/0/00
144959.0%26191.9%36 (100%)35 (97.2%)0/0/0/00
2824141.9%64495.7%101 (100%)99 (98.0%)0/0/0/01
197100%713100%97 (100%)97 (100%)0/0/0/01
112173.6%62299.4%89 (100%)88 (98.9%)0/0/0/01
11219.0%73100%12 (100%)12 (100%)0/0/0/00
1317393.1%112898.9%161 (100%)159 (98.8%)0/0/0/01
Protein mutations:V52I (33243G>A), S165N (33583G>A)
Codon mutations:GTT52ATT (33243G>A), TGC58TGT (33263C>T), GTC70GTT (33299C>T), TCG137TCA (33500G>A), TTG141TTA (33512G>A), AGC165AAC (33583G>A)
514395.2%88697.9%139 (100%)138 (99.3%)0/0/0/00
162100%386100%62 (100%)62 (100%)0/0/0/01
Proteins
1100100%79999.8%100 (100%)99 (99.0%)0/0/0/01
Protein mutations:S36T (22846A>T)
Codon mutations:TCG36ACG (22846A>T), CAT79CAC (22715A>G), TTC89TTT (22685G>A), GGA95GGC (22667T>G)
1531615.6%5786.4%9 (100%)9 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
159.1%2686.7%5 (100%)4 (80.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
59861.2%39993.2%60 (100%)59 (98.3%)0/0/0/01
Protein mutations:none
Codon mutations:none
62752.4%159100%22 (100%)22 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
406526.3%18388.8%26 (100%)25 (96.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
15376.8%33297.4%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
19065.7%61599.4%90 (100%)89 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
144959.0%26191.9%36 (100%)35 (97.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
2824141.9%64495.7%101 (100%)99 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
197100%713100%97 (100%)97 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GCA8GCG (32282A>G), GGC10GGA (32288C>A), TGC13TGT (32297C>T)
112173.6%62299.4%89 (100%)88 (98.9%)0/0/0/01
Protein mutations:none
Codon mutations:none
11219.0%73100%12 (100%)12 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1317393.1%112898.9%161 (100%)159 (98.8%)0/0/0/01
Protein mutations:V52I (33243G>A), S165N (33583G>A)
Codon mutations:GTT52ATT (33243G>A), TGC58TGT (33263C>T), GTC70GTT (33299C>T), TCG137TCA (33500G>A), TTG141TTA (33512G>A), AGC165AAC (33583G>A)
514395.2%88697.9%139 (100%)138 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
162100%386100%62 (100%)62 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43