Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus fiAA91ss

Assembly

7269 (42 contig(s))
4.1
277
17.87 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus fiAA91ss (Taxonomy ID: 2560457)
99.7661
98.6595
10
40

Alignment

14470.0 (NT) + 14565.0 (AA) = 29035.0
99.7492
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT1793039621.6%1447099.5%7269 (100%)7252 (99.8%)0/0
Mutations:4714C>T, 4750G>A, 4852G>A, 5182C>T, 17882A>G, 18037C>T, 18158C>A, 19589G>A, 19601G>A, 20057G>T, 20093A>G, 20132T>C, 20192A>C, 20194A>G, 22056A>G, 22068T>C, 22071G>T
CDS
3283455.2%120100%18 (100%)18 (100%)0/0/0/01
157312.4%46697.3%73 (100%)72 (98.6%)0/0/0/00
128530.5%56697.6%87 (100%)85 (97.7%)0/0/0/01
5135851.1%120298.5%183 (100%)182 (99.5%)0/0/0/01
124833.9%54698.2%84 (100%)83 (98.8%)0/0/0/01
1541667.8%8995.7%13 (100%)13 (100%)0/0/0/01
19016.9%14894.9%24 (100%)22 (91.7%)0/0/0/00
10614526.5%26897.1%40 (100%)39 (97.5%)0/0/0/00
119458.5%79598.4%124 (100%)122 (98.4%)0/0/0/00
4411662.9%474100%73 (100%)73 (100%)0/0/0/01
123331.7%61995.5%96 (100%)93 (96.9%)0/0/0/00
3036849.6%127997.2%197 (100%)195 (99.0%)0/0/0/00
179282.6%44198.2%76 (100%)76 (100%)0/0/0/01
180059.1%302998.5%482 (100%)477 (99.0%)0/0/0/00
Protein mutations:Q673R (20194A>G)
Codon mutations:GGG471GGA (19589G>A), GAG475GAA (19601G>A), GTG627GTT (20057G>T), GAA639GAG (20093A>G), GGT652GGC (20132T>C), ACA672ACC (20192A>C), CAG673CGG (20194A>G)
29636718.6%47299.0%72 (100%)71 (98.6%)0/0/0/00
12737.0%20895.4%27 (100%)26 (96.3%)0/0/0/00
21525615.8%25094.7%42 (100%)41 (97.6%)0/0/0/00
116953.3%63298.0%90 (100%)89 (98.9%)0/0/0/01
12128.0%13896.5%21 (100%)20 (95.2%)0/0/0/00
637517.3%85100%13 (100%)13 (100%)0/0/0/01
19257.6%35497.8%53 (100%)52 (98.1%)0/0/0/01
163145.7%238497.5%350 (100%)346 (98.9%)0/0/0/00
Proteins
3283455.2%120100%18 (100%)18 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
157312.4%46697.3%73 (100%)72 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
128530.5%56697.6%87 (100%)85 (97.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
5135851.1%120298.5%183 (100%)182 (99.5%)0/0/0/01
Protein mutations:none
Codon mutations:GAC211GAT (4714C>T), GAG223GAA (4750G>A), GAG257GAA (4852G>A)
124833.9%54698.2%84 (100%)83 (98.8%)0/0/0/01
Protein mutations:none
Codon mutations:CAC8CAT (5182C>T)
1541667.8%8995.7%13 (100%)13 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19016.9%14894.9%24 (100%)22 (91.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
10614526.5%26897.1%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
119458.5%79598.4%124 (100%)122 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
4411662.9%474100%73 (100%)73 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
123331.7%61995.5%96 (100%)93 (96.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
3036849.6%127997.2%197 (100%)195 (99.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
179282.6%44198.2%76 (100%)76 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GCA42GCG (17882A>G)
180059.1%302998.5%482 (100%)477 (99.0%)0/0/0/00
Protein mutations:Q673R (20194A>G)
Codon mutations:GGG471GGA (19589G>A), GAG475GAA (19601G>A), GTG627GTT (20057G>T), GAA639GAG (20093A>G), GGT652GGC (20132T>C), ACA672ACC (20192A>C), CAG673CGG (20194A>G)
29636718.6%47299.0%72 (100%)71 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:AAA313AAG (22056A>G), GGT317GGC (22068T>C), GTG318GTT (22071G>T)
12737.0%20895.4%27 (100%)26 (96.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
21525615.8%25094.7%42 (100%)41 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
116953.3%63298.0%90 (100%)89 (98.9%)0/0/0/01
Protein mutations:none
Codon mutations:none
12128.0%13896.5%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
637517.3%85100%13 (100%)13 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19257.6%35497.8%53 (100%)52 (98.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
163145.7%238497.5%350 (100%)346 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43