Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Yautsimvirus HK140

Assembly

3778 (24 contig(s))
5.0
183
11.81 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Yautsimvirus HK140 (Taxonomy ID: 2844127)
99.8677
98.289
12
71

Alignment

7536.0 (NT) + 7115.0 (AA) = 14651.0
99.7753
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22745399549.3%753699.7%3778 (100%)3773 (99.9%)0/0
Mutations:30014T>A, 30015T>A, 36640C>T, 39030C>A, 39173G>A
CDS
156100%444100%56 (100%)56 (100%)0/0/0/01
11911.8%11990.8%19 (100%)18 (94.7%)0/0/0/00
485514.5%55100%8 (100%)8 (100%)0/0/0/01
15698.2%37196.9%56 (100%)55 (98.2%)0/0/0/00
546720.9%7792.8%14 (100%)14 (100%)0/0/0/01
4919438.1%49795.0%74 (100%)73 (98.6%)0/0/0/01
19133.0%17795.2%30 (100%)29 (96.7%)0/0/0/01
142100%27096.8%42 (100%)41 (97.6%)0/0/0/01
Protein mutations:E24V (30014T>A 30015T>A)
Codon mutations:GAA24GTT (30014T>A 30015T>A)
124840.0%88397.7%120 (100%)119 (99.2%)0/0/0/00
8423428.6%46796.7%67 (100%)66 (98.5%)0/0/0/01
19735.1%21997.8%34 (100%)33 (97.1%)0/0/0/01
113326.5%25797.0%39 (100%)38 (97.4%)0/0/0/00
1413330.1%39194.2%53 (100%)52 (98.1%)0/0/0/00
18124125.3%40898.1%61 (100%)61 (100%)0/0/0/01
19781.4%55899.3%79 (100%)78 (98.7%)0/0/0/01
112160.3%46096.6%73 (100%)71 (97.3%)0/0/0/01
15790.5%36297.6%57 (100%)56 (98.2%)0/0/0/00
1061082.8%17100%3 (100%)3 (100%)0/0/0/01
413938.4%43595.8%61 (100%)59 (96.7%)0/0/0/00
4413059.6%52797.4%87 (100%)85 (97.7%)0/0/0/00
Protein mutations:S107N (39173G>A)
Codon mutations:GCC59GCA (39030C>A), AGC107AAC (39173G>A)
11941.3%121100%19 (100%)19 (100%)0/0/0/00
Proteins
156100%444100%56 (100%)56 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
11911.8%11990.8%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
485514.5%55100%8 (100%)8 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15698.2%37196.9%56 (100%)55 (98.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
546720.9%7792.8%14 (100%)14 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
4919438.1%49795.0%74 (100%)73 (98.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
19133.0%17795.2%30 (100%)29 (96.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
142100%27096.8%42 (100%)41 (97.6%)0/0/0/01
Protein mutations:E24V (30014T>A 30015T>A)
Codon mutations:GAA24GTT (30014T>A 30015T>A)
124840.0%88397.7%120 (100%)119 (99.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
8423428.6%46796.7%67 (100%)66 (98.5%)0/0/0/01
Protein mutations:none
Codon mutations:none
19735.1%21997.8%34 (100%)33 (97.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
113326.5%25797.0%39 (100%)38 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
1413330.1%39194.2%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
18124125.3%40898.1%61 (100%)61 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19781.4%55899.3%79 (100%)78 (98.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
112160.3%46096.6%73 (100%)71 (97.3%)0/0/0/01
Protein mutations:none
Codon mutations:CGC56CGT (36640C>T)
15790.5%36297.6%57 (100%)56 (98.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
1061082.8%17100%3 (100%)3 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
413938.4%43595.8%61 (100%)59 (96.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
4413059.6%52797.4%87 (100%)85 (97.7%)0/0/0/00
Protein mutations:S107N (39173G>A)
Codon mutations:GCC59GCA (39030C>A), AGC107AAC (39173G>A)
11941.3%121100%19 (100%)19 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43