Genome Detective

Genome Region

Sequence starts at position 751 and ends at position 5386 relative to NC_001422.1 reference sequence.

NC_001422.1

SRR3458562_Metagenome_example-NC_001422.1-118-0

NC_001422.1

SRR3458562_Metagenome_example-NC_001422.1-118-0

NC_001422.1

SRR3458562_Metagenome_example-NC_001422.1-118-0

NC_001422.1

SRR3458562_Metagenome_example-NC_001422.1-118-0

GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT

ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATG

TTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAG

GCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTTCTTATTACCC

TTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTT

GGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA

..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGGCTTTGGTATGTAGGTGGTAAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAA..

.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTAAGCTAATTTGCATACTGACCAAGACCGTGATT.................................................................................................................................................................................................................................CTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATG

TTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGCTGGCTACGATTACAGGGGGTATTGCTTCTGCTGTTGCCGGTGGCGCAATAACTAAATTGTTTGGAG

GCGGTCAAAAAGCCGCCTCCGGTGGCACTCAAGGTGATGTGCTTG...............................................................................TGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTTCTTATTACCC

TTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAACGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTT

GGTTTCTATGTGGCTACATACGTTAACAAAAAGTCAGA.....................................TGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGC.................................................................................CTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATGTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA

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phiX174p01

MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQCYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGIKDECSRLLEASTMKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNL

MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAX...............................................................................................................................................................................................................XVRYTQDAFSRSGWLWPVDANGEPLKATSYMAVGFYVATYVNKKSX............WNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNLSTECLIQLTKX..........................XVADVLAAQPVTTNLLKCMRASIKMIGVSNL

phiX174p01

SFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK*

.............................................

phiX174p02

SFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK*

.............................................

phiX174p03

MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPA

XEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQX..........................XCSRRFGGATCDDKSAQMYARFDKNDWRIQPA

phiX174p03

EFYRFHDAEVNTFGYF*

.................

phiX174p04

MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPSTNDSVKN*

.........................................................

phiX174p05

MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS*

.......................................................................................

phiX174p07

MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM*

........................................................................................................................XAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM*

phiX174p08

MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNLRKTLLMASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVRKE*

.............................................................SRLPCVYAQETLTFLLTQKKTCVKNYVQKE*

phiX174p09

MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF*

MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGKQF*

phiX174p06

MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS*

...........................................................................................................................................WMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAA*ANLHTDQDRDX..........................................................................XLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQEX.............................................

phiX174p10

MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK*

................................................................................................................................................................................

phiX174p11

MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDAGIKSAIQGSNVPNPDEAAPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK*

RLATITGGIASAVAGGAITKLFGGGQKAASGGTQGDVLX.........................XEAVPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSX.......................................................................................................................................................................................XGDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK*


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	751	5386	34.2%	3578	97.2%	1841 (100%)	1815 (98.6%)	0/0
Mutations:	833G>A, 934T>G, 953C>A, 1600T>A, 1624A>C, 2932T>G, 2934T>C, 2936T>G, 2938G>C, 2940G>A, 2942T>G, 2946G>A, 2948T>A, 2951C>G, 2967C>G, 2972T>C, 2981C>A, 2984G>A, 2985T>A, 3028T>C, 3133C>T, 3814T>G, 4277A>T, 4964A>C, 5017A>C, 5344T>G
CDS

phiX174p01	1	469	43.2%	1419	95.9%	222 (100%)	215 (96.8%)	0/0/0/0	0
Protein mutations:	K328N (4964A>C), K346T (5017A>C), F455C (5344T>G)
Codon mutations:	GCA99GCT (4277A>T), AAA328AAC (4964A>C), AAA346ACA (5017A>C), TTT455TGT (5344T>G)
phiX174p02	137	297	35.7%	735	93.3%	122 (100%)	116 (95.1%)	0/0/0/0	0
Protein mutations:	K156N (4964A>C), K174T (5017A>C), F283C (5344T>G)
Codon mutations:	AAA156AAC (4964A>C), AAA174ACA (5017A>C), TTT283TGT (5344T>G)
phiX174p03	2	104	62.8%	546	95.8%	76 (100%)	74 (97.4%)	0/0/0/0	0
Protein mutations:	I90M (5344T>G)
Codon mutations:	ATT90ATG (5344T>G)
phiX174p07	122	153	20.9%	192	95.0%	32 (100%)	32 (100%)	0/0/0/0	1
phiX174p08	62	92	33.7%	196	97.5%	31 (100%)	30 (96.8%)	0/0/0/0	1
Protein mutations:	R89Q (833G>A)
Codon mutations:	CGG89CAG (833G>A)
phiX174p09	1	39	100%	265	97.1%	39 (100%)	38 (97.4%)	0/0/0/0	1
Protein mutations:	Q36K (953C>A)
Codon mutations:	CGT29CGG (934T>G), CAA36AAA (953C>A)
phiX174p06	140	383	39.5%	1184	96.3%	169 (100%)	165 (97.6%)	0/0/0/0	1
Protein mutations:	Y200* (1600T>A), E208D (1624A>C)
Codon mutations:	TAT200TAA (1600T>A), GAA208GAC (1624A>C)
phiX174p11	1	329	36.2%	680	89.8%	119 (100%)	106 (89.1%)	0/0/0/0	1
Protein mutations:	M1R (2932T>G), F2L (2934T>C 2936T>G), G3A (2938G>C), A4T (2940G>A 2942T>G), A6T (2946G>A 2948T>A), L13V (2967C>G), M18I (2984G>A), S19T (2985T>A), I33T (3028T>C), A68V (3133C>T), V295G (3814T>G)
Codon mutations:	ATG1AGG (2932T>G), TTT2CTG (2934T>C 2936T>G), GGT3GCT (2938G>C), GCT4ACG (2940G>A 2942T>G), GCT6ACA (2946G>A 2948T>A), GGC7GGG (2951C>G), CTT13GTT (2967C>G), GCT14GCC (2972T>C), GCC17GCA (2981C>A), ATG18ATA (2984G>A), TCT19ACT (2985T>A), ATT33ACT (3028T>C), GCC68GTC (3133C>T), GTT295GGT (3814T>G)
Proteins

A (NP_040703.1)	1	469	43.2%	1419	95.9%	222 (100%)	215 (96.8%)	0/0/0/0	0
Protein mutations:	K328N (4964A>C), K346T (5017A>C), F455C (5344T>G)
Codon mutations:	GCA99GCT (4277A>T), AAA328AAC (4964A>C), AAA346ACA (5017A>C), TTT455TGT (5344T>G)
A* (NP_040704.1)	137	297	35.7%	735	93.3%	122 (100%)	116 (95.1%)	0/0/0/0	0
Protein mutations:	K156N (4964A>C), K174T (5017A>C), F283C (5344T>G)
Codon mutations:	AAA156AAC (4964A>C), AAA174ACA (5017A>C), TTT283TGT (5344T>G)
B (NP_040705.1)	2	104	62.8%	546	95.8%	76 (100%)	74 (97.4%)	0/0/0/0	0
Protein mutations:	I90M (5344T>G)
Codon mutations:	ATT90ATG (5344T>G)
D (NP_040708.1)	122	153	20.9%	192	95.0%	32 (100%)	32 (100%)	0/0/0/0	1
Protein mutations:	none
Codon mutations:	GCG148GCA (833G>A)
E (NP_040709.1)	62	92	33.7%	196	97.5%	31 (100%)	30 (96.8%)	0/0/0/0	1
Protein mutations:	R89Q (833G>A)
Codon mutations:	CGG89CAG (833G>A)
J (NP_040710.1)	1	39	100%	265	97.1%	39 (100%)	38 (97.4%)	0/0/0/0	1
Protein mutations:	Q36K (953C>A)
Codon mutations:	CGT29CGG (934T>G), CAA36AAA (953C>A)
F (NP_040711.1)	140	383	39.5%	1184	96.3%	169 (100%)	165 (97.6%)	0/0/0/0	1
Protein mutations:	Y200* (1600T>A), E208D (1624A>C)
Codon mutations:	TAT200TAA (1600T>A), GAA208GAC (1624A>C)
H (NP_040713.1)	1	329	36.2%	680	89.8%	119 (100%)	106 (89.1%)	0/0/0/0	1
Protein mutations:	M1R (2932T>G), F2L (2934T>C 2936T>G), G3A (2938G>C), A4T (2940G>A 2942T>G), A6T (2946G>A 2948T>A), L13V (2967C>G), M18I (2984G>A), S19T (2985T>A), I33T (3028T>C), A68V (3133C>T), V295G (3814T>G)
Codon mutations:	ATG1AGG (2932T>G), TTT2CTG (2934T>C 2936T>G), GGT3GCT (2938G>C), GCT4ACG (2940G>A 2942T>G), GCT6ACA (2946G>A 2948T>A), GGC7GGG (2951C>G), CTT13GTT (2967C>G), GCT14GCC (2972T>C), GCC17GCA (2981C>A), ATG18ATA (2984G>A), TCT19ACT (2985T>A), ATT33ACT (3028T>C), GCC68GTC (3133C>T), GTT295GGT (3814T>G)

Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Sinsheimervirus phiX174

Assembly

Coverage Map

Variant Tables

Assignment

Alignment

Genome Region

Alignment Detailed Statistics

Analysis details