Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Saikungvirus HK633

Assembly

3649 (21 contig(s))
7.6
255
16.45 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Saikungvirus HK633 (Taxonomy ID: 2169924)
99.6437
98.5666
8
67

Alignment

7246.0 (NT) + 8003.0 (AA) = 15249.0
99.5366
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT20863390608.8%724699.3%3649 (100%)3636 (99.6%)0/0
Mutations:20940C>A, 20943A>G, 20988A>G, 21222C>T, 21252A>G, 21289T>A, 21360G>A, 21396C>A, 25396T>G, 34187G>A, 34298C>A, 34340T>C, 34412T>A
CDS
15238459.1%159698.6%233 (100%)231 (99.1%)0/0/0/00
Protein mutations:Q242L (21289T>A)
Codon mutations:CCG206CCT (21396C>A), AGC218AGT (21360G>A), CAA242CTA (21289T>A), ACT254ACC (21252A>G), AAG264AAA (21222C>T), GAT342GAC (20988A>G), CGT357CGC (20943A>G), GGG358GGT (20940C>A)
13370.2%21695.2%33 (100%)32 (97.0%)0/0/0/00
496728.4%13487.0%19 (100%)19 (100%)0/0/0/01
110837.3%38695.3%60 (100%)58 (96.7%)0/0/0/00
285550.9%18095.7%28 (100%)28 (100%)0/0/0/01
17573.5%51599.0%72 (100%)71 (98.6%)0/0/0/00
6512850.0%43797.5%64 (100%)63 (98.4%)0/0/0/01
Protein mutations:N91T (25396T>G)
Codon mutations:AAT91ACT (25396T>G)
116746.0%58497.2%93 (100%)91 (97.8%)0/0/0/00
435726.3%120100%15 (100%)15 (100%)0/0/0/01
648724.5%14093.3%24 (100%)23 (95.8%)0/0/0/00
2513782.5%787100%113 (100%)113 (100%)0/0/0/01
15183.6%36993.9%51 (100%)49 (96.1%)0/0/0/00
Protein mutations:S24T (34412T>A)
Codon mutations:TCC24ACC (34412T>A)
4323434.9%56596.6%84 (100%)83 (98.8%)0/0/0/00
69767.0%44493.5%65 (100%)64 (98.5%)0/0/0/01
112190.9%75097.3%110 (100%)109 (99.1%)0/0/0/01
16376.2%30495.6%48 (100%)48 (100%)0/0/0/01
121.0%535.7%2 (100%)1 (50.0%)0/0/0/00
3010649.1%35294.6%53 (100%)52 (98.1%)0/0/0/00
131.9%17100%3 (100%)3 (100%)0/0/0/00
12213710.4%10291.9%16 (100%)16 (100%)0/0/0/00
Proteins
15238459.1%159698.6%233 (100%)231 (99.1%)0/0/0/00
Protein mutations:Q242L (21289T>A)
Codon mutations:CCG206CCT (21396C>A), AGC218AGT (21360G>A), CAA242CTA (21289T>A), ACT254ACC (21252A>G), AAG264AAA (21222C>T), GAT342GAC (20988A>G), CGT357CGC (20943A>G), GGG358GGT (20940C>A)
13370.2%21695.2%33 (100%)32 (97.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
496728.4%13487.0%19 (100%)19 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
110837.3%38695.3%60 (100%)58 (96.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
285550.9%18095.7%28 (100%)28 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
17573.5%51599.0%72 (100%)71 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
6512850.0%43797.5%64 (100%)63 (98.4%)0/0/0/01
Protein mutations:N91T (25396T>G)
Codon mutations:AAT91ACT (25396T>G)
116746.0%58497.2%93 (100%)91 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
435726.3%120100%15 (100%)15 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
648724.5%14093.3%24 (100%)23 (95.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
2513782.5%787100%113 (100%)113 (100%)0/0/0/01
Protein mutations:none
Codon mutations:AAG84AAA (34187G>A), GCC121GCA (34298C>A), TAT135TAC (34340T>C)
15183.6%36993.9%51 (100%)49 (96.1%)0/0/0/00
Protein mutations:S24T (34412T>A)
Codon mutations:TCC24ACC (34412T>A)
4323434.9%56596.6%84 (100%)83 (98.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
69767.0%44493.5%65 (100%)64 (98.5%)0/0/0/01
Protein mutations:none
Codon mutations:none
112190.9%75097.3%110 (100%)109 (99.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
16376.2%30495.6%48 (100%)48 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
121.0%535.7%2 (100%)1 (50.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
3010649.1%35294.6%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
131.9%17100%3 (100%)3 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
12213710.4%10291.9%16 (100%)16 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43