Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Punavirus RCS47
Assembly
227 (1 contig(s))
86.4
213
13.74 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
378.0 (NT) + 404.0 (AA) = 782.0
89.1676
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 108022 | 108248 | 0.2% | 378 | 83.3% | 227 (100%) | 208 (91.6%) | 0/0 | |
| Mutations: | 108051C>G, 108088G>A, 108118G>A, 108142C>G, 108145G>T, 108154T>G, 108157A>G, 108163G>A, 108169G>T, 108175A>G, 108180C>T, 108181A>G, 108190T>G, 108191G>C, 108192G>A, 108200C>T, 108205A>T, 108237T>G, 108245A>C | ||||||||