Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia virus Lambda_2G7b

Assembly

1409 (6 contig(s))
15.2
211
13.61 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia virus Lambda_2G7b (Taxonomy ID: 2686053)
97.4468
97.7401
5
66

Alignment

2668.0 (NT) + 2298.0 (AA) = 4966.0
96.2963
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT23690443733.0%266894.7%1409 (99.9%)1374 (97.4%)1/0
Mutations:23710G>A, 23728G>A, 23993C>T, 26622A>G, 26630T>C, 26631T>C, 26633T>G, 26637A>G, 26638T>C, 26656A>G, 26662T>G, 26672C>T, 26674A>G, 26678G>T, 26683T>G, 26703T>C, 26731G>A, 26732G>T, 26738T>G, 26740C>T, 26763A>G, 26785T>C, 26817T>A, 34767A>T, 34768T>G, 34769G>A, 34774T>G, 34775_34776insT, 34815C>T, 34884C>T, 37901A>T, 40670A>T, 40999G>A, 41000T>C, 41001G>C, 44238T>C
CDS
15122332.7%473100%73 (100%)73 (100%)0/0/0/01
2883189.7%20292.2%31 (100%)30 (96.8%)0/0/0/01
Protein mutations:N304S (26785T>C)
Codon mutations:TCA293TCT (26817T>A), AAC304AGC (26785T>C), GCT311GCC (26763A>G)
54190.2%220100%37 (100%)37 (100%)0/0/0/01
417244.4%20594.0%32 (100%)31 (96.9%)0/0/0/01
Protein mutations:K57N (37901A>T)
Codon mutations:AAA57AAT (37901A>T)
8414743.5%42197.7%64 (100%)63 (98.4%)0/0/0/01
Protein mutations:Q99L (40670A>T)
Codon mutations:CAG99CTG (40670A>T)
16637.5%50093.3%66 (100%)63 (95.5%)0/0/0/00
Protein mutations:G63D (40999G>A 41000T>C), A64P (41001G>C)
Codon mutations:GGT63GAC (40999G>A 41000T>C), GCA64CCA (41001G>C)
15113.4%27796.9%51 (100%)49 (96.1%)0/0/0/00
Protein mutations:Q42R (44238T>C)
Codon mutations:CAG42CGG (44238T>C)
Proteins
15122332.7%473100%73 (100%)73 (100%)0/0/0/01
Protein mutations:none
Codon mutations:CAG180CAA (23993C>T)
2883189.7%20292.2%31 (100%)30 (96.8%)0/0/0/01
Protein mutations:N304S (26785T>C)
Codon mutations:TCA293TCT (26817T>A), AAC304AGC (26785T>C), GCT311GCC (26763A>G)
54190.2%220100%37 (100%)37 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GTG5GTA (34884C>T), GCG28GCA (34815C>T)
417244.4%20594.0%32 (100%)31 (96.9%)0/0/0/01
Protein mutations:K57N (37901A>T)
Codon mutations:AAA57AAT (37901A>T)
8414743.5%42197.7%64 (100%)63 (98.4%)0/0/0/01
Protein mutations:Q99L (40670A>T)
Codon mutations:CAG99CTG (40670A>T)
16637.5%50093.3%66 (100%)63 (95.5%)0/0/0/00
Protein mutations:G63D (40999G>A 41000T>C), A64P (41001G>C)
Codon mutations:GGT63GAC (40999G>A 41000T>C), GCA64CCA (41001G>C)
15113.4%27796.9%51 (100%)49 (96.1%)0/0/0/00
Protein mutations:Q42R (44238T>C)
Codon mutations:CAG42CGG (44238T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43