Version 2.16.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Wongtaivirus ECP1

Assembly

1882 (12 contig(s))
11.5
193
12.45 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Wongtaivirus ECP1 (Taxonomy ID: 2844189)
99.5749
98.6231
6
63

Alignment

3732.0 (NT) + 3857.0 (AA) = 7589.0
99.5409
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2746400274.7%373299.1%1882 (100%)1874 (99.6%)0/0
Mutations:4546C>T, 4582C>T, 4630G>A, 4650A>G, 4657A>G, 4743C>T, 4749C>A, 4836C>T
CDS
11314723.8%245100%35 (100%)35 (100%)0/0/0/01
117647.2%57497.0%83 (100%)82 (98.8%)0/0/0/01
123.4%535.7%2 (100%)1 (50.0%)0/0/0/00
209780.4%56899.5%78 (100%)77 (98.7%)0/0/0/01
Protein mutations:K90R (4650A>G)
Codon mutations:AGC55AGT (4546C>T), AAC67AAT (4582C>T), AGG83AGA (4630G>A), AAG90AGG (4650A>G), GGA92GGG (4657A>G)
112189.3%73498.7%108 (100%)107 (99.1%)0/0/0/01
13555.6%221100%35 (100%)35 (100%)0/0/0/00
14315910.7%9696.0%17 (100%)17 (100%)0/0/0/01
113767.1%60699.0%98 (100%)98 (100%)0/0/0/00
1641735.8%61100%10 (100%)10 (100%)0/0/0/01
638321.2%15187.8%21 (100%)20 (95.2%)0/0/0/00
14578.9%29798.7%45 (100%)44 (97.8%)0/0/0/00
166251.6%29496.1%47 (100%)46 (97.9%)0/0/0/00
122.2%541.7%2 (100%)1 (50.0%)0/0/0/00
Proteins
11314723.8%245100%35 (100%)35 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
117647.2%57497.0%83 (100%)82 (98.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
123.4%535.7%2 (100%)1 (50.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
209780.4%56899.5%78 (100%)77 (98.7%)0/0/0/01
Protein mutations:K90R (4650A>G)
Codon mutations:AGC55AGT (4546C>T), AAC67AAT (4582C>T), AGG83AGA (4630G>A), AAG90AGG (4650A>G), GGA92GGG (4657A>G)
112189.3%73498.7%108 (100%)107 (99.1%)0/0/0/01
Protein mutations:none
Codon mutations:TAC25TAT (4743C>T), ATC27ATA (4749C>A), CGC56CGT (4836C>T)
13555.6%221100%35 (100%)35 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
14315910.7%9696.0%17 (100%)17 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
113767.1%60699.0%98 (100%)98 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1641735.8%61100%10 (100%)10 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
638321.2%15187.8%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
14578.9%29798.7%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
166251.6%29496.1%47 (100%)46 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
122.2%541.7%2 (100%)1 (50.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43