Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Shamshuipovirus HK022

Assembly

1025 (3 contig(s))
16.8
173
11.16 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Shamshuipovirus HK022 (Taxonomy ID: 10742)
90.0394
95.098
1
35

Alignment

1559.0 (NT) + 652.0 (AA) = 2211.0
82.9644
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT24345381672.5%155978.7%1011 (98.3%)913 (88.8%)3/14
Mutations:24362T>A, 24364G>T, 24389T>A, 33087A>G, 33112C>T, 33125C>A, 33137C>A, 33169T>C, 33170G>A, 33173T>A, 33211G>T, 33235C>T, 33265C>T, 33267C>T, 33268T>C, 33274C>A, 33278A>G, 33300G>A, 33302A>T, 33304T>G, 33309G>T, 33314_33322delTATCGATGG, 33328T>A, 33329C>G, 33330A>C, 33334A>T, 33335A>G, 33336G>C, 33348A>G, 33357G>A, 33366A>G, 33368_33369insG, 33375A>T, 33487C>A, 33498C>T, 33501G>A, 33507_33508insC, 33510T>C, 33511C>A, 33512C>A, 33513T>A, 33514G>A, 33516A>C, 33517G>C, 33523G>A, 33526C>G, 33527G>C, 33528T>C, 33529_33532delGAGG, 33535T>C, 33538T>C, 33540T>C, 33541A>G, 33542C>G, 33543C>T, 33548T>A, 33549C>T, 33550G>C, 33552G>C, 33553delG, 33556G>T, 33559G>C, 33561C>A, 33562A>T, 33563C>G, 33565T>C, 33567T>C, 33568G>A, 33570T>G, 33572A>G, 33573T>C, 33575A>G, 33576C>A, 33578A>T, 33585T>A, 33586A>C, 33588T>A, 33589G>A, 33591A>G, 33592T>C, 33594C>A, 33595G>T, 33596A>G, 33597A>T, 33598G>A, 33601C>G, 33603G>C, 33603_33604insT, 33606T>C, 33612T>C, 33619G>A, 33638T>C, 37828T>C, 37843C>T, 37900T>G, 37908A>T, 37960G>C, 37996A>C, 38017A>G, 38058A>C, 38080G>A, 38085C>T, 38151A>G, 38160C>T
CDS
12611.0%15990.9%26 (100%)24 (92.3%)0/0/0/00
Protein mutations:R20S (24362T>A 24364G>T)
Codon mutations:GGA11GGT (24389T>A), CGA20AGT (24362T>A 24364G>T)
8415947.8%49395.5%76 (100%)73 (96.1%)0/0/0/01
Protein mutations:D109E (37900T>G), D112V (37908A>T), K141N (37996A>C)
Codon mutations:GAT85GAC (37828T>C), AGC90AGT (37843C>T), GAT109GAG (37900T>G), GAT112GTT (37908A>T), GGG129GGC (37960G>C), AAA141AAC (37996A>C), GAA148GAG (38017A>G)
Proteins
12611.0%15990.9%26 (100%)24 (92.3%)0/0/0/00
Protein mutations:R20S (24362T>A 24364G>T)
Codon mutations:GGA11GGT (24389T>A), CGA20AGT (24362T>A 24364G>T)
8415947.8%49395.5%76 (100%)73 (96.1%)0/0/0/01
Protein mutations:D109E (37900T>G), D112V (37908A>T), K141N (37996A>C)
Codon mutations:GAT85GAC (37828T>C), AGC90AGT (37843C>T), GAT109GAG (37900T>G), GAT112GTT (37908A>T), GGG129GGC (37960G>C), AAA141AAC (37996A>C), GAA148GAG (38017A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43