Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage SfV

Assembly

955 (4 contig(s))
16.3
160
10.32 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Enterobacteria phage SfV (Taxonomy ID: 55884)
95.1832
94.7598
2
53

Alignment

1726.0 (NT) + 1548.0 (AA) = 3274.0
92.8005
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT6714358992.6%172690.4%955 (100%)909 (95.2%)0/0
Mutations:6726T>C, 24704A>G, 24760G>A, 24761A>G, 24789A>G, 24869A>G, 25854A>T, 25965T>C, 26077A>G, 35622A>G, 35625A>G, 35627T>A, 35628T>A, 35629T>A, 35635G>A, 35636G>A, 35637C>A, 35638A>T, 35641A>T, 35645T>C, 35647C>T, 35665G>C, 35677A>C, 35698C>T, 35703G>T, 35719C>T, 35722C>T, 35731T>C, 35734T>C, 35740T>G, 35743T>C, 35746C>A, 35750C>A, 35752G>A, 35781A>G, 35800C>A, 35815A>G, 35818C>T, 35824A>G, 35827T>C, 35842A>C, 35857T>A, 35875C>A, 35884T>C, 35887T>C, 35894G>A
CDS
14416915.4%15688.6%26 (100%)25 (96.2%)0/0/0/01
Protein mutations:W148R (6726T>C)
Codon mutations:TGG148CGG (6726T>C)
12513.4%16397.6%25 (100%)24 (96.0%)0/0/0/00
8917136.9%60495.1%83 (100%)80 (96.4%)0/0/0/00
Protein mutations:I95T (26077A>G), D169E (25854A>T)
Codon mutations:ATA95ACA (26077A>G), TTA132TTG (25965T>C), GAT169GAA (25854A>T)
1081124.5%1157.9%5 (100%)4 (80.0%)0/0/0/01
Protein mutations:E111G (35622A>G)
Codon mutations:GAG111GGG (35622A>G), TAA112TGA (35625A>G)
19056.6%61495.6%90 (100%)84 (93.3%)0/0/0/00
Protein mutations:A3N (35636G>A 35637C>A 35638A>T), S6P (35645T>C 35647C>T), R25L (35703G>T), L41I (35750C>A 35752G>A), K51R (35781A>G), E89K (35894G>A)
Codon mutations:CAG2CAA (35635G>A), GCA3AAT (35636G>A 35637C>A 35638A>T), CTA4CTT (35641A>T), TCC6CCT (35645T>C 35647C>T), CTG12CTC (35665G>C), GCA16GCC (35677A>C), AAC23AAT (35698C>T), CGA25CTA (35703G>T), AAC30AAT (35719C>T), CAC31CAT (35722C>T), GAT34GAC (35731T>C), GTT35GTC (35734T>C), GTT37GTG (35740T>G), GGT38GGC (35743T>C), GGC39GGA (35746C>A), CTG41ATA (35750C>A 35752G>A), AAA51AGA (35781A>G), CCC57CCA (35800C>A), ACA62ACG (35815A>G), GCC63GCT (35818C>T), GGA65GGG (35824A>G), CGT66CGC (35827T>C), TCA71TCC (35842A>C), GCT76GCA (35857T>A), GGC82GGA (35875C>A), GAT85GAC (35884T>C), TTT86TTC (35887T>C), GAA89AAA (35894G>A)
Proteins
14416915.4%15688.6%26 (100%)25 (96.2%)0/0/0/01
Protein mutations:W148R (6726T>C)
Codon mutations:TGG148CGG (6726T>C)
12513.4%16397.6%25 (100%)24 (96.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
8917136.9%60495.1%83 (100%)80 (96.4%)0/0/0/00
Protein mutations:I95T (26077A>G), D169E (25854A>T)
Codon mutations:ATA95ACA (26077A>G), TTA132TTG (25965T>C), GAT169GAA (25854A>T)
1081124.5%1157.9%5 (100%)4 (80.0%)0/0/0/01
Protein mutations:E111G (35622A>G)
Codon mutations:GAG111GGG (35622A>G), TAA112TGA (35625A>G)
19056.6%61495.6%90 (100%)84 (93.3%)0/0/0/00
Protein mutations:A3N (35636G>A 35637C>A 35638A>T), S6P (35645T>C 35647C>T), R25L (35703G>T), L41I (35750C>A 35752G>A), K51R (35781A>G), E89K (35894G>A)
Codon mutations:CAG2CAA (35635G>A), GCA3AAT (35636G>A 35637C>A 35638A>T), CTA4CTT (35641A>T), TCC6CCT (35645T>C 35647C>T), CTG12CTC (35665G>C), GCA16GCC (35677A>C), AAC23AAT (35698C>T), CGA25CTA (35703G>T), AAC30AAT (35719C>T), CAC31CAT (35722C>T), GAT34GAC (35731T>C), GTT35GTC (35734T>C), GTT37GTG (35740T>G), GGT38GGC (35743T>C), GGC39GGA (35746C>A), CTG41ATA (35750C>A 35752G>A), AAA51AGA (35781A>G), CCC57CCA (35800C>A), ACA62ACG (35815A>G), GCC63GCT (35818C>T), GGA65GGG (35824A>G), CGT66CGC (35827T>C), TCA71TCC (35842A>C), GCT76GCA (35857T>A), GGC82GGA (35875C>A), GAT85GAC (35884T>C), TTT86TTC (35887T>C), GAA89AAA (35894G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43