Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus YPM50

Assembly

1039 (6 contig(s))
15.7
158
10.19 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus YPM50 (Taxonomy ID: 2956280)
93.6477
93.75
3
38

Alignment

1814.0 (NT) + 1554.0 (AA) = 3368.0
91.2737
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT3917302103.3%181487.3%1039 (100%)973 (93.6%)0/0
Mutations:3926G>A, 3927C>T, 3929C>T, 3930A>G, 3931T>A, 3933C>T, 3936G>A, 3939A>T, 3941G>C, 3942T>A, 3962T>C, 4052A>G, 4054T>C, 4059T>C, 4064A>T, 4065T>C, 4068T>C, 4069G>C, 4072C>T, 4073C>T, 4075G>A, 4096C>G, 4116T>C, 4181T>A, 4258A>G, 4268C>T, 4313C>A, 4325C>T, 4337T>G, 16405A>G, 16406A>T, 16407A>C, 16409C>T, 16414G>A, 16438T>A, 16441G>A, 16480C>T, 16700G>A, 16704C>G, 16731T>A, 16734T>C, 16738G>A, 16739A>C, 16741A>T, 16747C>A, 16751G>T, 16753A>G, 16756C>T, 16759G>C, 16762T>C, 16769G>A, 16770C>T, 16771C>T, 16772A>G, 16773A>G, 16774T>A, 16776A>C, 16777G>A, 16788C>A, 16795T>A, 16804C>A, 16806T>C, 30046A>G, 30074T>C, 30207C>T, 30210A>C
CDS
28934516.5%390100%57 (100%)57 (100%)0/0/0/01
18791213.4%77890.9%122 (100%)109 (89.3%)0/0/0/01
Protein mutations:K189S (16406A>T 16407A>C), A287T (16700G>A), A288G (16704C>G), F297Y (16731T>A), I298T (16734T>C), V304L (16751G>T 16753A>G), M306I (16759G>C), A310I (16769G>A 16770C>T 16771C>T), N311G (16772A>G 16773A>G 16774T>A), K312T (16776A>C 16777G>A), T316N (16788C>A), V322A (16806T>C)
Codon mutations:GAA188GAG (16405A>G), AAA189TCA (16406A>T 16407A>C), CTG190TTG (16409C>T), GCG191GCA (16414G>A), GCT199GCA (16438T>A), GCG200GCA (16441G>A), AAC213AAT (16480C>T), GCT287ACT (16700G>A), GCC288GGC (16704C>G), TTT297TAT (16731T>A), ATC298ACC (16734T>C), ACG299ACA (16738G>A), AGA300CGT (16739A>C 16741A>T), GGC302GGA (16747C>A), GTA304TTG (16751G>T 16753A>G), TAC305TAT (16756C>T), ATG306ATC (16759G>C), CGT307CGC (16762T>C), GCC310ATT (16769G>A 16770C>T 16771C>T), AAT311GGA (16772A>G 16773A>G 16774T>A), AAG312ACA (16776A>C 16777G>A), ACT316AAT (16788C>A), GGT318GGA (16795T>A), GGC321GGA (16804C>A), GTA322GCA (16806T>C)
184.5%5090.9%8 (100%)7 (87.5%)0/0/0/00
1541678.4%8688.7%14 (100%)14 (100%)0/0/0/01
13952.0%25090.6%39 (100%)38 (97.4%)0/0/0/00
Proteins
28934516.5%390100%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GGA289GGC (4337T>G), GAG293GAA (4325C>T), TCG297TCT (4313C>A), GAG312GAA (4268C>T), TTA316CTA (4258A>G), ACA341ACT (4181T>A)
18791213.4%77890.9%122 (100%)109 (89.3%)0/0/0/01
Protein mutations:K189S (16406A>T 16407A>C), A287T (16700G>A), A288G (16704C>G), F297Y (16731T>A), I298T (16734T>C), V304L (16751G>T 16753A>G), M306I (16759G>C), A310I (16769G>A 16770C>T 16771C>T), N311G (16772A>G 16773A>G 16774T>A), K312T (16776A>C 16777G>A), T316N (16788C>A), V322A (16806T>C)
Codon mutations:GAA188GAG (16405A>G), AAA189TCA (16406A>T 16407A>C), CTG190TTG (16409C>T), GCG191GCA (16414G>A), GCT199GCA (16438T>A), GCG200GCA (16441G>A), AAC213AAT (16480C>T), GCT287ACT (16700G>A), GCC288GGC (16704C>G), TTT297TAT (16731T>A), ATC298ACC (16734T>C), ACG299ACA (16738G>A), AGA300CGT (16739A>C 16741A>T), GGC302GGA (16747C>A), GTA304TTG (16751G>T 16753A>G), TAC305TAT (16756C>T), ATG306ATC (16759G>C), CGT307CGC (16762T>C), GCC310ATT (16769G>A 16770C>T 16771C>T), AAT311GGA (16772A>G 16773A>G 16774T>A), AAG312ACA (16776A>C 16777G>A), ACT316AAT (16788C>A), GGT318GGA (16795T>A), GGC321GGA (16804C>A), GTA322GCA (16806T>C)
184.5%5090.9%8 (100%)7 (87.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
1541678.4%8688.7%14 (100%)14 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13952.0%25090.6%39 (100%)38 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:CAC41..T (30207C>T), ATA42..C (30210A>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43