Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Wongtaivirus HK542

Assembly

1047 (3 contig(s))
11.4
118
7.61 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Wongtaivirus HK542 (Taxonomy ID: 2169922)
97.7077
97.2881
3
57

Alignment

1998.0 (NT) + 2002.0 (AA) = 4000.0
96.5484
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22790245942.7%199895.4%1047 (100%)1023 (97.7%)0/0
Mutations:22988G>A, 22994T>C, 22996G>A, 23057A>T, 23206C>T, 23215A>T, 23236G>A, 23257T>C, 23363G>C, 23423C>T, 23424C>T, 23427T>C, 23472A>G, 23484T>C, 23487G>C, 24227A>T, 24233C>T, 24245A>G, 24260A>C, 24269T>C, 24325A>G, 24367A>G, 24490A>G, 24519G>A
CDS
17373.7%527100%73 (100%)73 (100%)0/0/0/00
112871.1%60696.0%91 (100%)88 (96.7%)0/0/0/01
Protein mutations:A18G (23363G>C), V120E (23057A>T)
Codon mutations:GCC18GGC (23363G>C), CCA53CCG (23257T>C), TAC60TAT (23236G>A), GGT67GGA (23215A>T), GTG70GTA (23206C>T), GTA120GAA (23057A>T)
17020216.3%21698.6%33 (100%)32 (97.0%)0/0/0/01
Protein mutations:A200T (23423C>T)
Codon mutations:GGC178GGG (23487G>C), ACA179ACG (23484T>C), CAT183CAC (23472A>G), GGA198GGG (23427T>C), GCG199GCA (23424C>T), GCT200ACT (23423C>T)
14171.9%26987.9%41 (100%)37 (90.2%)0/0/0/00
Protein mutations:C7W (24260A>C), M16I (24233C>T), D18E (24227A>T)
Codon mutations:ACA4ACG (24269T>C), TGT7TGG (24260A>C), TTT12TTC (24245A>G), ATG16ATA (24233C>T), GAT18GAA (24227A>T)
157100%384100%57 (100%)57 (100%)0/0/0/01
Proteins
17373.7%527100%73 (100%)73 (100%)0/0/0/00
Protein mutations:none
Codon mutations:CTA5TTG (22994T>C 22996G>A), GGC7GGT (22988G>A)
112871.1%60696.0%91 (100%)88 (96.7%)0/0/0/01
Protein mutations:A18G (23363G>C), V120E (23057A>T)
Codon mutations:GCC18GGC (23363G>C), CCA53CCG (23257T>C), TAC60TAT (23236G>A), GGT67GGA (23215A>T), GTG70GTA (23206C>T), GTA120GAA (23057A>T)
17020216.3%21698.6%33 (100%)32 (97.0%)0/0/0/01
Protein mutations:A200T (23423C>T)
Codon mutations:GGC178GGG (23487G>C), ACA179ACG (23484T>C), CAT183CAC (23472A>G), GGA198GGG (23427T>C), GCG199GCA (23424C>T), GCT200ACT (23423C>T)
14171.9%26987.9%41 (100%)37 (90.2%)0/0/0/00
Protein mutations:C7W (24260A>C), M16I (24233C>T), D18E (24227A>T)
Codon mutations:ACA4ACG (24269T>C), TGT7TGG (24260A>C), TTT12TTC (24245A>G), ATG16ATA (24233C>T), GAT18GAA (24227A>T)
157100%384100%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:AAT27AAC (24367A>G), AGT41AGC (24325A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43