Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Punavirus RCS47
Assembly
204 (1 contig(s))
47.0
105
6.78 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
320.0 (NT) + 365.0 (AA) = 685.0
83.4348
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 108027 | 108230 | 0.2% | 320 | 78.4% | 204 (100%) | 182 (89.2%) | 0/0 | |
| Mutations: | 108030G>A, 108035G>T, 108043T>C, 108049A>G, 108067C>T, 108088G>A, 108089T>G, 108118G>A, 108142C>G, 108145G>T, 108154T>G, 108157A>G, 108163G>A, 108169G>T, 108175A>G, 108180C>T, 108181A>G, 108190T>G, 108191G>C, 108192G>A, 108200C>T, 108205A>T | ||||||||