Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Marienburgvirus JLK2012

Assembly

746 (2 contig(s))
12.1
85
5.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Marienburgvirus JLK2012 (Taxonomy ID: 2844207)
97.319
97.8261
0
79

Alignment

1412.0 (NT) + 376.0 (AA) = 1788.0
95.7173
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2798351.3%141294.6%746 (100%)726 (97.3%)0/0
Mutations:37T>C, 48T>C, 58C>T, 79T>A, 91C>T, 115T>C, 205G>A, 238C>T, 259A>G, 262T>C, 274A>G, 280G>A, 282C>A, 336G>C, 388C>T, 463G>A, 535A>T, 9704T>C, 9824T>G, 9827C>T
CDS
317630.5%37697.7%46 (100%)45 (97.8%)0/0/0/00
Proteins
317630.5%37697.7%46 (100%)45 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:GGG33GGA (9827C>T), ATA34ATC (9824T>G), AAA74AAG (9704T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43