Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Salmonella phage UPF_BP1

Assembly

1720 (12 contig(s))
4.2
82
5.29 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage UPF_BP1 (Taxonomy ID: 1912492)
99.8837
98.0658
4
71

Alignment

3432.0 (NT) + 3397.0 (AA) = 6829.0
99.8246
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT3012300864.3%343299.8%1720 (100%)1718 (99.9%)0/0
Mutations:24280T>G, 24359G>A
CDS
346633.0%23498.3%33 (100%)32 (97.0%)0/0/0/00
38343511.5%37396.6%53 (100%)52 (98.1%)0/0/0/00
477315.8%17897.8%27 (100%)26 (96.3%)0/0/0/00
398153.1%255100%43 (100%)43 (100%)0/0/0/01
121.5%660.0%2 (100%)1 (50.0%)0/0/0/00
2833157.6%24898.4%33 (100%)33 (100%)0/0/0/00
2072268.5%10696.4%20 (100%)19 (95.0%)0/0/0/00
13515211.8%124100%18 (100%)18 (100%)0/0/0/01
123132.9%46596.7%76 (100%)75 (98.7%)0/0/0/01
16313.8%39798.0%63 (100%)61 (96.8%)0/0/0/00
Protein mutations:E39K (24359G>A)
Codon mutations:GGT12GGG (24280T>G), GAA39AAA (24359G>A)
131246.8%100199.5%146 (100%)145 (99.3%)0/0/0/01
130.4%1050.0%3 (100%)2 (66.7%)0/0/0/00
Proteins
346633.0%23498.3%33 (100%)32 (97.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
38343511.5%37396.6%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
477315.8%17897.8%27 (100%)26 (96.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
398153.1%255100%43 (100%)43 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
121.5%660.0%2 (100%)1 (50.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
2833157.6%24898.4%33 (100%)33 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
2072268.5%10696.4%20 (100%)19 (95.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
13515211.8%124100%18 (100%)18 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
123132.9%46596.7%76 (100%)75 (98.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
16313.8%39798.0%63 (100%)61 (96.8%)0/0/0/00
Protein mutations:E39K (24359G>A)
Codon mutations:GGT12GGG (24280T>G), GAA39AAA (24359G>A)
131246.8%100199.5%146 (100%)145 (99.3%)0/0/0/01
Protein mutations:none
Codon mutations:none
130.4%1050.0%3 (100%)2 (66.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43