Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Cuauhtlivirus mEpX1

Assembly

1938 (15 contig(s))
3.6
75
4.84 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Cuauhtlivirus mEpX1 (Taxonomy ID: 2169927)
100.0
98.4536
7
66

Alignment

3876.0 (NT) + 3853.0 (AA) = 7729.0
100.0
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT24284407444.7%3876100%1938 (100%)1938 (100%)0/0
Mutations:none
CDS
111470.8%75399.3%114 (100%)113 (99.1%)0/0/0/00
505510.9%2959.2%6 (100%)6 (100%)0/0/0/01
406021.2%15185.3%21 (100%)20 (95.2%)0/0/0/00
97971.0%111.1%1 (100%)1 (100%)0/0/0/01
11927.5%11496.6%19 (100%)18 (94.7%)0/0/0/00
2313743.8%40498.1%60 (100%)60 (100%)0/0/0/01
14472.1%31198.7%44 (100%)43 (97.7%)0/0/0/00
17024230.2%487100%73 (100%)73 (100%)0/0/0/01
19745.4%28296.9%44 (100%)43 (97.7%)0/0/0/01
112127.3%23496.7%33 (100%)33 (100%)0/0/0/01
13860.3%23796.3%38 (100%)37 (97.4%)0/0/0/00
110812.0%86100%13 (100%)13 (100%)0/0/0/01
112827.0%30698.7%43 (100%)42 (97.7%)0/0/0/00
310850.0%45894.2%73 (100%)71 (97.3%)0/0/0/00
Proteins
111470.8%75399.3%114 (100%)113 (99.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
505510.9%2959.2%6 (100%)6 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
406021.2%15185.3%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
97971.0%111.1%1 (100%)1 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
11927.5%11496.6%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
2313743.8%40498.1%60 (100%)60 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
14472.1%31198.7%44 (100%)43 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
17024230.2%487100%73 (100%)73 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19745.4%28296.9%44 (100%)43 (97.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
112127.3%23496.7%33 (100%)33 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13860.3%23796.3%38 (100%)37 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
110812.0%86100%13 (100%)13 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
112827.0%30698.7%43 (100%)42 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
310850.0%45894.2%73 (100%)71 (97.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43