Version 2.15.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Salmonella phage g341c

Assembly

409 (1 contig(s))
18.7
68
4.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage g341c (Taxonomy ID: 590739)
93.8875
90.303
1
68

Alignment

718.0 (NT) + 967.0 (AA) = 1685.0
89.58
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT38289386971.0%71887.8%409 (100%)384 (93.9%)0/0
Mutations:38292A>T, 38331C>A, 38349C>T, 38391T>C, 38405G>A, 38413G>C, 38432C>G, 38434C>T, 38441C>A, 38472C>T, 38487A>G, 38490C>A, 38502A>G, 38509C>T, 38512C>T, 38521A>T, 38522G>A, 38574G>A, 38582A>T, 38591C>T, 38600C>T, 38624C>T, 38642C>T, 38663T>G, 38665G>A
CDS
11615927.7%29093.9%44 (100%)42 (95.5%)0/0/0/01
Protein mutations:R154K (38405G>A), E157Q (38413G>C)
Codon mutations:GCA116GCT (38292A>T), GGC129GGA (38331C>A), TTC135TTT (38349C>T), GCT149GCC (38391T>C), AGA154AAA (38405G>A), GAG157CAG (38413G>C)
19464.4%53088.3%94 (100%)84 (89.4%)0/0/0/00
Protein mutations:A6V (38434C>T), N24D (38487A>G), H25N (38490C>A), N29D (38502A>G), T31I (38509C>T), A32V (38512C>T), E35V (38521A>T 38522G>A), D53N (38574G>A), R83H (38665G>A)
Codon mutations:ACC5ACG (38432C>G), GCG6GTG (38434C>T), ATC8ATA (38441C>A), CTG19TTG (38472C>T), AAT24GAT (38487A>G), CAT25AAT (38490C>A), AAC29GAC (38502A>G), ACC31ATC (38509C>T), GCC32GTC (38512C>T), GAG35GTA (38521A>T 38522G>A), GAT53AAT (38574G>A), GCA55GCT (38582A>T), GAC58GAT (38591C>T), TAC61TAT (38600C>T), AAC69AAT (38624C>T), CTC75CTT (38642C>T), GGT82GGG (38663T>G), CGT83CAT (38665G>A)
12743.5%14788.6%27 (100%)23 (85.2%)0/0/0/00
Protein mutations:T3M (38624C>T), S9F (38642C>T), V16G (38663T>G), V17I (38665G>A)
Codon mutations:ACG3ATG (38624C>T), TCC9TTC (38642C>T), GTC16GGC (38663T>G), GTA17ATA (38665G>A)
Proteins
11615927.7%29093.9%44 (100%)42 (95.5%)0/0/0/01
Protein mutations:R154K (38405G>A), E157Q (38413G>C)
Codon mutations:GCA116GCT (38292A>T), GGC129GGA (38331C>A), TTC135TTT (38349C>T), GCT149GCC (38391T>C), AGA154AAA (38405G>A), GAG157CAG (38413G>C)
19464.4%53088.3%94 (100%)84 (89.4%)0/0/0/00
Protein mutations:A6V (38434C>T), N24D (38487A>G), H25N (38490C>A), N29D (38502A>G), T31I (38509C>T), A32V (38512C>T), E35V (38521A>T 38522G>A), D53N (38574G>A), R83H (38665G>A)
Codon mutations:ACC5ACG (38432C>G), GCG6GTG (38434C>T), ATC8ATA (38441C>A), CTG19TTG (38472C>T), AAT24GAT (38487A>G), CAT25AAT (38490C>A), AAC29GAC (38502A>G), ACC31ATC (38509C>T), GCC32GTC (38512C>T), GAG35GTA (38521A>T 38522G>A), GAT53AAT (38574G>A), GCA55GCT (38582A>T), GAC58GAT (38591C>T), TAC61TAT (38600C>T), AAC69AAT (38624C>T), CTC75CTT (38642C>T), GGT82GGG (38663T>G), CGT83CAT (38665G>A)
12743.5%14788.6%27 (100%)23 (85.2%)0/0/0/00
Protein mutations:T3M (38624C>T), S9F (38642C>T), V16G (38663T>G), V17I (38665G>A)
Codon mutations:ACG3ATG (38624C>T), TCC9TTC (38642C>T), GTC16GGC (38663T>G), GTA17ATA (38665G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43