Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Lambdavirus HK630

Assembly

119 (1 contig(s))
21.3
31
2.00 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Lambdavirus HK630 (Taxonomy ID: 2169969)
90.7563
86.8421
1
69

Alignment

194.0 (NT) + 212.0 (AA) = 406.0
82.8571
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22254223720.3%19481.5%119 (100%)108 (90.8%)0/0
Mutations:22285G>T, 22290A>T, 22312T>A, 22330A>C, 22350C>T, 22351T>G, 22352G>A, 22353T>A, 22360T>C, 22362T>G, 22363G>A
CDS
15819519.5%21282.5%38 (100%)33 (86.8%)0/0/0/01
Protein mutations:W167C (22285G>T), K169M (22290A>T), A189V (22350C>T 22351T>G), V190N (22352G>A 22353T>A), M193R (22362T>G 22363G>A)
Codon mutations:TGG167TGT (22285G>T), AAG169ATG (22290A>T), CGT176CGA (22312T>A), GCA182GCC (22330A>C), GCT189GTG (22350C>T 22351T>G), GTC190AAC (22352G>A 22353T>A), GTT192GTC (22360T>C), ATG193AGA (22362T>G 22363G>A)
Proteins
15819519.5%21282.5%38 (100%)33 (86.8%)0/0/0/01
Protein mutations:W167C (22285G>T), K169M (22290A>T), A189V (22350C>T 22351T>G), V190N (22352G>A 22353T>A), M193R (22362T>G 22363G>A)
Codon mutations:TGG167TGT (22285G>T), AAG169ATG (22290A>T), CGT176CGA (22312T>A), GCA182GCC (22330A>C), GCT189GTG (22350C>T 22351T>G), GTC190AAC (22352G>A 22353T>A), GTT192GTC (22360T>C), ATG193AGA (22362T>G 22363G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43