Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus P24A7b

Assembly

700 (8 contig(s))
4.3
29
1.87 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus P24A7b (Taxonomy ID: 2844219)
90.0
92.2414
0
48

Alignment

1120.0 (NT) + 1423.0 (AA) = 2543.0
87.1189
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT4987202832.1%112080.0%700 (100%)630 (90.0%)0/0
Mutations:5009C>T, 5097C>T, 5133T>C, 5178C>T, 5313T>G, 5367T>C, 13853T>C, 13865C>T, 13868T>C, 13874A>T, 13877T>G, 13880G>A, 13886G>A, 13887A>C, 13889G>C, 13891T>C, 13892G>A, 13895A>G, 13901C>T, 13904C>A, 13912G>A, 13913T>C, 13925C>T, 13934A>C, 13940T>A, 13944T>A, 13945C>A, 13967A>G, 13973G>A, 13982T>C, 13983G>C, 13984C>A, 13985T>A, 13986G>A, 13991G>T, 13998T>A, 14002C>G, 14003G>T, 14004G>A, 14006A>T, 14007T>A, 14008G>C, 14009G>C, 14010A>T, 14011C>T, 14012T>C, 14016T>G, 14017C>A, 14018A>G, 14020G>A, 14021G>T, 14024T>C, 14027T>G, 14033C>T, 14034C>T, 14036T>G, 14037T>A, 14039A>G, 14040A>T, 14041A>C, 14042G>T, 14045T>A, 14054T>C, 14057C>T, 14060T>G, 17632G>A, 17650T>C, 20235G>A, 20256T>G, 20283A>T
CDS
30435614.8%33896.0%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:P311L (5009C>T)
Codon mutations:CCG311CTG (5009C>T), ATC340ATT (5097C>T), ACT352ACC (5133T>C)
127425.4%38993.1%63 (100%)62 (98.4%)0/0/0/00
3724448.3%45482.4%73 (100%)58 (79.5%)0/0/0/00
Protein mutations:M387T (13891T>C 13892G>A), S394N (13912G>A 13913T>C), S405K (13944T>A 13945C>A), A418Q (13983G>C 13984C>A 13985T>A), V419I (13986G>A), S423T (13998T>A), T424S (14002C>G 14003G>T), G425S (14004G>A 14006A>T), W426T (14007T>A 14008G>C 14009G>C), T427F (14010A>T 14011C>T 14012T>C), S429E (14016T>G 14017C>A 14018A>G), G430D (14020G>A 14021G>T), L436M (14037T>A 14039A>G), K437S (14040A>T 14041A>C 14042G>T)
Codon mutations:GGT374GGC (13853T>C), GTC378GTT (13865C>T), TTT379TTC (13868T>C), GGA381GGT (13874A>T), GGT382GGG (13877T>G), CTG383CTA (13880G>A), GGG385GGA (13886G>A), AGG386CGC (13887A>C 13889G>C), ATG387ACA (13891T>C 13892G>A), CAA388CAG (13895A>G), TAC390TAT (13901C>T), ACC391ACA (13904C>A), AGT394AAC (13912G>A 13913T>C), TAC398TAT (13925C>T), GGA401GGC (13934A>C), ACT403ACA (13940T>A), TCA405AAA (13944T>A 13945C>A), CAA412CAG (13967A>G), GAG414GAA (13973G>A), ATT417ATC (13982T>C), GCT418CAA (13983G>C 13984C>A 13985T>A), GTT419ATT (13986G>A), GGG420GGT (13991G>T), TCC423ACC (13998T>A), ACG424AGT (14002C>G 14003G>T), GGA425AGT (14004G>A 14006A>T), TGG426ACC (14007T>A 14008G>C 14009G>C), ACT427TTC (14010A>T 14011C>T 14012T>C), TCA429GAG (14016T>G 14017C>A 14018A>G), GGG430GAT (14020G>A 14021G>T), GAT431GAC (14024T>C), CTT432CTG (14027T>G), GAC434GAT (14033C>T), CTT435TTG (14034C>T 14036T>G), TTA436ATG (14037T>A 14039A>G), AAG437TCT (14040A>T 14041A>C 14042G>T), CCT438CCA (14045T>A), TAT441TAC (14054T>C), AGC442AGT (14057C>T), GTT443GTG (14060T>G)
418310.8%24295.7%43 (100%)42 (97.7%)0/0/0/00
Proteins
30435614.8%33896.0%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:P311L (5009C>T)
Codon mutations:CCG311CTG (5009C>T), ATC340ATT (5097C>T), ACT352ACC (5133T>C)
127425.4%38993.1%63 (100%)62 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:CAC8..T (5178C>T), CTT53CTG (5313T>G), GGT71GGC (5367T>C)
3724448.3%45482.4%73 (100%)58 (79.5%)0/0/0/00
Protein mutations:M387T (13891T>C 13892G>A), S394N (13912G>A 13913T>C), S405K (13944T>A 13945C>A), A418Q (13983G>C 13984C>A 13985T>A), V419I (13986G>A), S423T (13998T>A), T424S (14002C>G 14003G>T), G425S (14004G>A 14006A>T), W426T (14007T>A 14008G>C 14009G>C), T427F (14010A>T 14011C>T 14012T>C), S429E (14016T>G 14017C>A 14018A>G), G430D (14020G>A 14021G>T), L436M (14037T>A 14039A>G), K437S (14040A>T 14041A>C 14042G>T)
Codon mutations:GGT374GGC (13853T>C), GTC378GTT (13865C>T), TTT379TTC (13868T>C), GGA381GGT (13874A>T), GGT382GGG (13877T>G), CTG383CTA (13880G>A), GGG385GGA (13886G>A), AGG386CGC (13887A>C 13889G>C), ATG387ACA (13891T>C 13892G>A), CAA388CAG (13895A>G), TAC390TAT (13901C>T), ACC391ACA (13904C>A), AGT394AAC (13912G>A 13913T>C), TAC398TAT (13925C>T), GGA401GGC (13934A>C), ACT403ACA (13940T>A), TCA405AAA (13944T>A 13945C>A), CAA412CAG (13967A>G), GAG414GAA (13973G>A), ATT417ATC (13982T>C), GCT418CAA (13983G>C 13984C>A 13985T>A), GTT419ATT (13986G>A), GGG420GGT (13991G>T), TCC423ACC (13998T>A), ACG424AGT (14002C>G 14003G>T), GGA425AGT (14004G>A 14006A>T), TGG426ACC (14007T>A 14008G>C 14009G>C), ACT427TTC (14010A>T 14011C>T 14012T>C), TCA429GAG (14016T>G 14017C>A 14018A>G), GGG430GAT (14020G>A 14021G>T), GAT431GAC (14024T>C), CTT432CTG (14027T>G), GAC434GAT (14033C>T), CTT435TTG (14034C>T 14036T>G), TTA436ATG (14037T>A 14039A>G), AAG437TCT (14040A>T 14041A>C 14042G>T), CCT438CCA (14045T>A), TAT441TAC (14054T>C), AGC442AGT (14057C>T), GTT443GTG (14060T>G)
418310.8%24295.7%43 (100%)42 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:CAG54CAA (17632G>A), GCT60GCC (17650T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43