Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus YPM46

Assembly

512 (2 contig(s))
6.0
27
1.74 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus YPM46 (Taxonomy ID: 2956279)
99.2188
98.2456
0
41

Alignment

1008.0 (NT) + 1147.0 (AA) = 2155.0
99.0805
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT11027188871.6%100898.4%512 (100%)508 (99.2%)0/0
Mutations:11212C>T, 18645G>A, 18646A>C, 18651C>T
CDS
3811264.7%49298.8%75 (100%)74 (98.7%)0/0/0/00
28237724.2%65597.5%96 (100%)94 (97.9%)0/0/0/00
Protein mutations:M297L (18646A>C)
Codon mutations:GTG296GTA (18645G>A), ATG297CTG (18646A>C), GCC298GCT (18651C>T)
Proteins
3811264.7%49298.8%75 (100%)74 (98.7%)0/0/0/00
Protein mutations:none
Codon mutations:GGC99GGT (11212C>T)
28237724.2%65597.5%96 (100%)94 (97.9%)0/0/0/00
Protein mutations:M297L (18646A>C)
Codon mutations:GTG296GTA (18645G>A), ATG297CTG (18646A>C), GCC298GCT (18651C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43