Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia phage P1

Assembly

187 (1 contig(s))
12.7
27
1.74 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia phage P1 (Taxonomy ID: 2886926)
97.3262
93.3333
1
110

Alignment

354.0 (NT) + 628.0 (AA) = 982.0
93.4348
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT23045232310.2%35494.7%187 (100%)182 (97.3%)0/0
Mutations:23049C>T, 23090A>G, 23093G>A, 23096G>T, 23132G>A
CDS
13420.2%24382.9%34 (100%)29 (85.3%)0/0/0/00
Protein mutations:R5C (23132G>A), P17T (23096G>T), P18S (23093G>A), F19L (23090A>G)
Codon mutations:CGC5TGC (23132G>A), CCG17ACG (23096G>T), CCA18TCA (23093G>A), TTT19CTT (23090A>G), CAG32CAA (23049C>T)
379260.9%38596.0%56 (100%)55 (98.2%)0/0/0/01
Protein mutations:F81L (23096G>T)
Codon mutations:ACC69ACT (23132G>A), TTC81TTA (23096G>T), CGC82CGT (23093G>A), CAT83CAC (23090A>G)
Proteins
13420.2%24382.9%34 (100%)29 (85.3%)0/0/0/00
Protein mutations:R5C (23132G>A), P17T (23096G>T), P18S (23093G>A), F19L (23090A>G)
Codon mutations:CGC5TGC (23132G>A), CCG17ACG (23096G>T), CCA18TCA (23093G>A), TTT19CTT (23090A>G), CAG32CAA (23049C>T)
379260.9%38596.0%56 (100%)55 (98.2%)0/0/0/01
Protein mutations:F81L (23096G>T)
Codon mutations:ACC69ACT (23132G>A), TTC81TTA (23096G>T), CGC82CGT (23093G>A), CAT83CAC (23090A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43