Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pankowvirus YYZ2008

Assembly

344 (1 contig(s))
6.7
25
1.61 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pankowvirus YYZ2008 (Taxonomy ID: 2844135)
99.1279
95.8333
0
75

Alignment

676.0 (NT) + 172.0 (AA) = 848.0
98.6047
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT52923532660.6%67698.3%344 (100%)341 (99.1%)0/0
Mutations:53073T>C, 53166G>A, 53195T>A
CDS
1244.2%17297.2%24 (100%)23 (95.8%)0/0/0/00
Proteins
1244.2%17297.2%24 (100%)23 (95.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43