Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia phage TL-2011b

Assembly

2146 (5 contig(s))
21.9
491
31.68 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia phage TL-2011b (Taxonomy ID: 1124654)
96.7922
98.2759
3
57

Alignment

4004.0 (NT) + 1108.0 (AA) = 5112.0
94.7544
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT41245447834.8%400493.6%2144 (99.6%)2082 (96.7%)7/2
Mutations:41269T>G, 41271_41272delAT, 41321_41322insT, 41325T>C, 41327C>A, 41334C>T, 41340C>T, 41359A>T, 41363A>G, 41375G>A, 41378C>T, 41384G>A, 41399G>A, 41870C>T, 41936A>G, 41969T>C, 42026A>G, 42353G>A, 42463A>G, 42607A>G, 42616A>G, 42620A>T, 42629G>A, 42678T>C, 42679C>T, 42706A>G, 42726A>G, 42768G>T, 42845C>G, 43544A>C, 43571_43572insATCATT, 43595C>T, 43601T>C, 43633C>G, 43652T>A, 43653A>C, 43712A>G, 43721A>G, 43751T>C, 43760T>C, 43775T>C, 43796A>G, 43814C>T, 43847A>G, 43859A>G, 43913C>T, 43931G>A, 43932C>A, 43959T>C, 43961G>A, 43997A>G, 44015T>C, 44081T>A, 44082C>T, 44238A>C, 44324G>A, 44335T>C, 44390C>T, 44447C>A, 44504A>G, 44582C>A, 44672G>A, 44675C>G, 44726G>A, 44777A>G
CDS
118016.1%17995.7%29 (100%)28 (96.6%)0/0/0/01
117258.1%63196.9%100 (100%)99 (99.0%)0/0/0/01
206470.3%29896.8%45 (100%)44 (97.8%)0/0/0/01
Protein mutations:G31R (42845C>G)
Codon mutations:GGC31CGC (42845C>G), TCC56TCA (42768G>T)
Proteins
118016.1%17995.7%29 (100%)28 (96.6%)0/0/0/01
Protein mutations:none
Codon mutations:TTG10TTA (41870C>T), GGC167GGT (41399G>A), AAC172AAT (41384G>A), TCG174TCA (41378C>T), GAC175GAT (41375G>A), AAT179AAC (41363A>G)
117258.1%63196.9%100 (100%)99 (99.0%)0/0/0/01
Protein mutations:none
Codon mutations:GAC26GAT (42353G>A), TCT135TCC (42026A>G), ACA154ACG (41969T>C), ACT165ACC (41936A>G)
206470.3%29896.8%45 (100%)44 (97.8%)0/0/0/01
Protein mutations:G31R (42845C>G)
Codon mutations:GGC31CGC (42845C>G), TCC56TCA (42768G>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43