Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus AU5Stx1

Assembly

379 (3 contig(s))
6.3
23
1.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus AU5Stx1 (Taxonomy ID: 2844182)
96.8338
97.6744
1
85

Alignment

710.0 (NT) + 845.0 (AA) = 1555.0
96.464
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT19765203040.6%71093.7%379 (100%)367 (96.8%)0/0
Mutations:19827G>A, 19837A>G, 19873C>T, 19885G>T, 20023A>G, 20035A>T, 20059A>T, 20066C>T, 20074G>A, 20077A>G, 20217C>T, 20304C>A
CDS
385937.3%161100%22 (100%)22 (100%)0/0/0/01
110744.4%68495.9%107 (100%)104 (97.2%)0/0/0/00
Protein mutations:S2N (19827G>A), I5M (19837A>G)
Codon mutations:AGT2AAT (19827G>A), ATA5ATG (19837A>G), ATC17ATT (19873C>T), GTG21GTT (19885G>T), GAA67GAG (20023A>G), GGA71GGT (20035A>T), GTA79GTT (20059A>T), CTG82TTG (20066C>T), CCG84CCA (20074G>A), GAA85GAG (20077A>G), GCC132.T. (20217C>T), CCA161.A. (20304C>A)
Proteins
385937.3%161100%22 (100%)22 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GAG58GAA (19827G>A)
110744.4%68495.9%107 (100%)104 (97.2%)0/0/0/00
Protein mutations:S2N (19827G>A), I5M (19837A>G)
Codon mutations:AGT2AAT (19827G>A), ATA5ATG (19837A>G), ATC17ATT (19873C>T), GTG21GTT (19885G>T), GAA67GAG (20023A>G), GGA71GGT (20035A>T), GTA79GTT (20059A>T), CTG82TTG (20066C>T), CCG84CCA (20074G>A), GAA85GAG (20077A>G), GCC132.T. (20217C>T), CCA161.A. (20304C>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43