Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus II

Assembly

251 (6 contig(s))
9.8
23
1.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus II (Taxonomy ID: 1981164)
84.0637
82.9932
2
170

Alignment

342.0 (NT) + 878.0 (AA) = 1220.0
81.6054
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT50298564100.4%34268.1%251 (100%)211 (84.1%)0/0
Mutations:50298G>C, 50299C>A, 50306T>C, 50309T>C, 50330C>A, 50336C>T, 50340A>G, 50342T>C, 50345C>T, 50363G>A, 50366A>G, 50399A>G, 50402C>T, 50456G>T, 50462C>T, 50467A>C, 50468A>T, 50471C>G, 50477G>A, 50478G>A, 50479C>T, 50480T>G, 50481G>C, 50489G>A, 50492A>C, 50498T>C, 50501T>A, 50502C>A, 50504C>T, 50506C>T, 50507A>C, 56250T>G, 56339A>T, 56342A>G, 56343G>A, 56352A>T, 56358C>T, 56396T>G, 56404C>T, 56408T>C
CDS
701269.5%12753.8%23 (100%)19 (82.6%)0/0/0/00
Protein mutations:I79V (50340A>G 50342T>C), A125M (50478G>A 50479C>T 50480T>G)
Codon mutations:GCT65CA. (50298G>C 50299C>A), GTT67..C (50306T>C), TTT68..C (50309T>C), CGC75CGA (50330C>A), AGC77AGT (50336C>T), ATT79GTC (50340A>G 50342T>C), GTC80GTT (50345C>T), CCG86CCA (50363G>A), GAA87GAG (50366A>G), GAA98..G (50399A>G), CTC99..T (50402C>T), GCG117..T (50456G>T), GAC119..T (50462C>T), GAA121.CT (50467A>C 50468A>T), GAC122..G (50471C>G), AAG124..A (50477G>A), GCT125ATG (50478G>A 50479C>T 50480T>G), GAA126C.. (50481G>C), GAG128..A (50489G>A), AAA129..C (50492A>C), CTT131..C (50498T>C), GCT132..A (50501T>A), CTC133A.T (50502C>A 50504C>T), GCA134.TC (50506C>T 50507A>C)
4910721.7%5520.8%25 (100%)14 (56.0%)0/0/2/00
Protein mutations:S49H (50478G>A 50479C>T 50480T>G), F87L (50366A>G), R88W (50363G>A), D94N (50345C>T), N95D (50340A>G 50342T>C), A97T (50336C>T), A99S (50330C>A)
Codon mutations:TGC40GA. (50506C>T 50507A>C), GAG41A.T (50502C>A 50504C>T), AGC42T.. (50501T>A), AAG43G.. (50498T>C), TTT45G.. (50492A>C), CTC46T.. (50489G>A), TTC48..G (50481G>C), AGC49CAT (50478G>A 50479C>T 50480T>G), CTT50T.. (50477G>A), GTC52C.. (50471C>G), TTC53AG. (50467A>C 50468A>T), GTC55A.. (50462C>T), CGC57A.. (50456G>T), GAG75A.. (50402C>T), TTC76C.. (50399A>G), TTC87CTC (50366A>G), CGG88TGG (50363G>A), GAC94AAC (50345C>T), AAT95GAC (50340A>G 50342T>C), GCT97ACT (50336C>T), GCG99TCG (50330C>A), AAA106G.. (50309T>C), AAC107G.. (50306T>C), AGC109.TG (50298G>C 50299C>A)
5616158.7%41388.1%55 (100%)49 (89.1%)0/0/0/01
Protein mutations:E591V (56339A>T), E592G (56342A>G 56343G>A), L610* (56396T>G), P613S (56404C>T), V614A (56408T>C)
Codon mutations:GGT561GGG (56250T>G), GAG591GTG (56339A>T), GAG592GGA (56342A>G 56343G>A), CCA595CCT (56352A>T), TTC597TTT (56358C>T), TTA610TGA (56396T>G), CCA613TCA (56404C>T), GTT614GCT (56408T>C)
25429714.8%28392.2%44 (100%)40 (90.9%)0/0/0/01
Protein mutations:A256T (56404C>T), G271E (56358C>T), L273Q (56352A>T), T276I (56342A>G 56343G>A)
Codon mutations:GAA254GAG (56408T>C), GCC256ACC (56404C>T), CTA258CTC (56396T>G), GGA271GAA (56358C>T), CTG273CAG (56352A>T), ACT276ATC (56342A>G 56343G>A), CCT277CCA (56339A>T)
Proteins
701269.5%12753.8%23 (100%)19 (82.6%)0/0/0/00
Protein mutations:I79V (50340A>G 50342T>C), A125M (50478G>A 50479C>T 50480T>G)
Codon mutations:GCT65CA. (50298G>C 50299C>A), GTT67..C (50306T>C), TTT68..C (50309T>C), CGC75CGA (50330C>A), AGC77AGT (50336C>T), ATT79GTC (50340A>G 50342T>C), GTC80GTT (50345C>T), CCG86CCA (50363G>A), GAA87GAG (50366A>G), GAA98..G (50399A>G), CTC99..T (50402C>T), GCG117..T (50456G>T), GAC119..T (50462C>T), GAA121.CT (50467A>C 50468A>T), GAC122..G (50471C>G), AAG124..A (50477G>A), GCT125ATG (50478G>A 50479C>T 50480T>G), GAA126C.. (50481G>C), GAG128..A (50489G>A), AAA129..C (50492A>C), CTT131..C (50498T>C), GCT132..A (50501T>A), CTC133A.T (50502C>A 50504C>T), GCA134.TC (50506C>T 50507A>C)
4910721.7%5520.8%25 (100%)14 (56.0%)0/0/2/00
Protein mutations:S49H (50478G>A 50479C>T 50480T>G), F87L (50366A>G), R88W (50363G>A), D94N (50345C>T), N95D (50340A>G 50342T>C), A97T (50336C>T), A99S (50330C>A)
Codon mutations:TGC40GA. (50506C>T 50507A>C), GAG41A.T (50502C>A 50504C>T), AGC42T.. (50501T>A), AAG43G.. (50498T>C), TTT45G.. (50492A>C), CTC46T.. (50489G>A), TTC48..G (50481G>C), AGC49CAT (50478G>A 50479C>T 50480T>G), CTT50T.. (50477G>A), GTC52C.. (50471C>G), TTC53AG. (50467A>C 50468A>T), GTC55A.. (50462C>T), CGC57A.. (50456G>T), GAG75A.. (50402C>T), TTC76C.. (50399A>G), TTC87CTC (50366A>G), CGG88TGG (50363G>A), GAC94AAC (50345C>T), AAT95GAC (50340A>G 50342T>C), GCT97ACT (50336C>T), GCG99TCG (50330C>A), AAA106G.. (50309T>C), AAC107G.. (50306T>C), AGC109.TG (50298G>C 50299C>A)
5616158.7%41388.1%55 (100%)49 (89.1%)0/0/0/01
Protein mutations:E591V (56339A>T), E592G (56342A>G 56343G>A), L610* (56396T>G), P613S (56404C>T), V614A (56408T>C)
Codon mutations:GGT561GGG (56250T>G), GAG591GTG (56339A>T), GAG592GGA (56342A>G 56343G>A), CCA595CCT (56352A>T), TTC597TTT (56358C>T), TTA610TGA (56396T>G), CCA613TCA (56404C>T), GTT614GCT (56408T>C)
25429714.8%28392.2%44 (100%)40 (90.9%)0/0/0/01
Protein mutations:A256T (56404C>T), G271E (56358C>T), L273Q (56352A>T), T276I (56342A>G 56343G>A)
Codon mutations:GAA254GAG (56408T>C), GCC256ACC (56404C>T), CTA258CTC (56396T>G), GGA271GAA (56358C>T), CTG273CAG (56352A>T), ACT276ATC (56342A>G 56343G>A), CCT277CCA (56339A>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43