Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Ahtivirus sagseatwo
Assembly
236 (1 contig(s))
8.1
22
1.42 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
236.0 (NT) + 514.0 (AA) = 750.0
71.7017
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 169495 | 169730 | 0.1% | 236 | 50.0% | 236 (100%) | 177 (75.0%) | 0/0 | |
| Mutations: | 169504A>T, 169511G>A, 169513C>T, 169514G>A, 169515C>G, 169517A>T, 169519G>A, 169521G>C, 169525C>T, 169528A>G, 169529C>T, 169532C>T, 169534C>G, 169537G>A, 169549A>T, 169561C>A, 169567C>T, 169568G>A, 169569T>C, 169573C>T, 169588T>G, 169594C>G, 169599A>C, 169600C>T, 169606A>T, 169609A>T, 169612T>C, 169618T>A, 169621A>T, 169626C>G, 169627A>C, 169628T>C, 169630G>A, 169633T>A, 169643C>T, 169645T>A, 169646A>C, 169648G>T, 169651G>A, 169654T>C, 169657A>G, 169658T>C, 169660G>T, 169663A>T, 169666T>A, 169667C>T, 169668T>C, 169670A>G, 169673G>C, 169674G>A, 169675C>A, 169676A>T, 169678C>G, 169679C>A, 169681T>A, 169693T>A, 169696T>C, 169711T>A, 169720A>T | ||||||||