Version 2.16.3 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Leucotheavirus syn30
Assembly
146 (1 contig(s))
11.4
21
1.36 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
180.0 (NT) + 313.0 (AA) = 493.0
77.1518
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 66961 | 67106 | 0.1% | 180 | 61.6% | 146 (100%) | 118 (80.8%) | 0/0 | |
| Mutations: | 66971A>G, 66978T>A, 66980C>T, 66982G>A, 66989C>T, 66995T>G, 66999A>G, 67013A>G, 67014G>C, 67016A>T, 67022T>A, 67026C>G, 67028A>C, 67033G>A, 67034G>T, 67036T>C, 67040T>G, 67043T>A, 67046A>T, 67050A>G, 67061C>G, 67076G>A, 67082G>A, 67085T>C, 67091T>A, 67093G>A, 67094G>A, 67097G>T | ||||||||