Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage cdtI

Assembly

303 (2 contig(s))
5.2
18
1.16 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Enterobacteria phage cdtI (Taxonomy ID: 414970)
98.3498
97.0297
0
60

Alignment

586.0 (NT) + 677.0 (AA) = 1263.0
98.1352
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT18725406400.6%58696.7%303 (100%)298 (98.3%)0/0
Mutations:40454T>C, 40473G>A, 40497C>A, 40533A>G, 40572C>T
CDS
63816.5%20990.9%33 (100%)32 (97.0%)0/0/0/00
19926625.2%46895.5%68 (100%)66 (97.1%)0/0/0/00
Protein mutations:V204A (40454T>C)
Codon mutations:GTG204GCG (40454T>C), GAG210GAA (40473G>A), ACC218ACA (40497C>A), ACA230ACG (40533A>G), CCC243CCT (40572C>T)
Proteins
63816.5%20990.9%33 (100%)32 (97.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
19926625.2%46895.5%68 (100%)66 (97.1%)0/0/0/00
Protein mutations:V204A (40454T>C)
Codon mutations:GTG204GCG (40454T>C), GAG210GAA (40473G>A), ACC218ACA (40497C>A), ACA230ACG (40533A>G), CCC243CCT (40572C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43