Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Libanvirus ptim40
Assembly
131 (1 contig(s))
12.4
16
1.03 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
134.0 (NT) + 303.0 (AA) = 437.0
72.1122
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 19493 | 19623 | 0.1% | 134 | 51.1% | 131 (100%) | 99 (75.6%) | 0/0 | |
| Mutations: | 19502T>A, 19505C>T, 19508C>T, 19514C>T, 19520A>T, 19538C>T, 19542C>T, 19547C>A, 19553A>C, 19566T>C, 19568G>T, 19569G>T, 19574A>T, 19576T>A, 19580C>T, 19581A>C, 19583A>T, 19586T>C, 19587C>G, 19590C>T, 19592T>G, 19595C>T, 19597T>A, 19599G>A, 19602A>C, 19604C>A, 19605G>A, 19611C>T, 19613T>G, 19616A>T, 19619A>C, 19622G>A | ||||||||