Version 2.16.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pankowvirus WGPS6

Assembly

114 (1 contig(s))
11.7
14
0.90 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pankowvirus WGPS6 (Taxonomy ID: 2844235)
99.1228
94.7368
0
78

Alignment

224.0 (NT) + 250.0 (AA) = 474.0
98.9562
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22442225550.2%22498.2%114 (100%)113 (99.1%)0/0
Mutations:22446G>A
CDS
518823.3%25092.9%38 (100%)36 (94.7%)0/0/0/00
Protein mutations:V52I (22446G>A)
Codon mutations:GTT52ATT (22446G>A)
Proteins
518823.3%25092.9%38 (100%)36 (94.7%)0/0/0/00
Protein mutations:V52I (22446G>A)
Codon mutations:GTT52ATT (22446G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43