NGS Details (SRR3458562_Metagenome_example): Salmonella phage SPN9CC

Assembly

115 (1 contig(s))
9.8
13
0.84 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage SPN9CC (Taxonomy ID: 1127357)
98.2609
97.3684
0
62

Alignment

222.0 (NT) + 252.0 (AA) = 474.0
98.3402
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT19776198900.3%22296.5%115 (100%)113 (98.3%)0/0
Mutations:19783C>T, 19819C>T
CDS
579422.0%25294.4%38 (100%)37 (97.4%)0/0/0/00
Proteins
579422.0%25294.4%38 (100%)37 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:TGC58TGT (19783C>T), GTC70GTT (19819C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43