Version 2.16.3 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Makelovirus prm1
Assembly
206 (1 contig(s))
6.2
12
0.77 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
252.0 (NT) + 471.0 (AA) = 723.0
80.5122
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 79903 | 80108 | 0.1% | 252 | 61.2% | 206 (100%) | 166 (80.6%) | 0/0 | |
| Mutations: | 79916C>T, 79919T>A, 79922A>T, 79931T>A, 79937A>T, 79938T>A, 79940T>C, 79946C>T, 79950C>T, 79953G>A, 79958T>C, 79961T>A, 79962T>A, 79973T>A, 79974T>A, 79975C>G, 79976G>T, 79979C>T, 79985C>T, 79988T>C, 79994C>T, 79997C>A, 80000C>A, 80018C>T, 80025C>A, 80030C>A, 80039A>T, 80054G>T, 80063C>A, 80066C>T, 80069T>C, 80073C>T, 80075T>A, 80078T>C, 80081G>A, 80087T>G, 80090C>A, 80096T>C, 80099T>C, 80105G>A | ||||||||