Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Mouse mammary tumor virus

Assembly

587 (3 contig(s))
2.4
11
0.71 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Mouse mammary tumor virus (Taxonomy ID: 11757)
63.5593
54.6419
0
5

Alignment

296.0 (NT) + 1628.0 (AA) = 1924.0
50.1303
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT167234126.7%29625.6%584 (98.5%)375 (63.2%)6/3
Mutations:1674G>A, 1677G>C, 1679G>T, 1680G>T, 1689A>T, 1693T>G, 1695A>T, 1696T>C, 1697T>C, 1698G>T, 1701T>C, 1704G>A, 1705G>A, 1706A>C, 1707T>A, 1710C>G, 1711A>T, 1713C>G, 1716C>A, 1722A>T, 1725T>A, 1728A>G, 1729A>T, 1730C>T, 1731A>T, 1734A>G, 1735A>T, 1737T>A, 1738A>C, 1741C>A, 1742A>C, 1743G>A, 1746T>C, 1749T>C, 1753C>A, 1754G>A, 1755T>A, 1756G>C, 1757C>A, 1758T>A, 1762C>G, 1763T>C, 1764G>T, 1768G>T, 1769C>T, 1771T>A, 1773T>G, 1776C>A, 1779A>C, 1780G>T, 1782T>C, 1783G>A, 1785T>G, 1788G>A, 1791T>A, 1792A>G, 1794G>T, 1797A>C, 1798T>A, 1799A>T, 1800T>G, 1806A>C, 1810A>T, 1812G>A, 1814G>A, 1818A>G, 1819C>G, 1823A>G, 1824G>C, 1825_1827delTAT, 1828T>C, 1831A>C, 1832C>T, 1833C>T, 1835T>A, 1837G>T, 1838T>G, 1839A>T, 1841A>T, 1848A>T, 1849T>A, 1850A>T, 1851T>G, 1852G>A, 1853G>C, 1855G>A, 1856G>A, 1857_1858insAAA, 1863A>T, 1864G>A, 1868G>C, 1870C>G, 1871A>T, 1872A>G, 1873G>A, 1877C>T, 1881A>T, 1884G>T, 1885C>G, 1886C>A, 1887_1888insAAT, 1889T>C, 1890T>C, 1893T>C, 1899C>T, 1905T>A, 1906A>C, 1908G>A, 1909A>C, 1910C>A, 1911A>G, 1918A>T, 1920C>T, 1923A>T, 1925A>G, 1927G>C, 1929C>A, 1932T>C, 1933A>C, 1934A>C, 1935G>C, 3055C>T, 3064T>C, 3065A>T, 3067G>T, 3070T>C, 3071G>A, 3074T>C, 3076T>C, 3077G>A, 3079C>T, 3082T>C, 3091G>A, 3094A>T, 3107C>T, 3118C>T, 3121A>G, 3122C>A, 3124T>A, 3127A>C, 3128G>A, 3132A>G, 3135C>A, 3136T>G, 3139A>C, 3145C>A, 3154A>G, 3156C>T, 3157A>C, 3158T>C, 3214A>T, 3221C>T, 3223A>G, 3229T>C, 3232C>T, 3238T>C, 3241T>C, 3244A>C, 3245A>C, 3246A>C, 3247A>C, 3248C>T, 3250G>A, 3251C>G, 3253T>C, 3257G>A, 3259A>G, 3262T>C, 3263T>A, 3265T>G, 3266A>C, 3267A>C, 3268A>C, 3269A>C, 3277T>C, 3283T>C, 3284G>T, 3286G>A, 3289C>T, 3292C>A, 3293C>G, 3294C>A, 3295T>A, 3298T>C, 3301T>G, 3303A>G, 3316A>G, 3322C>T, 3325A>G, 3334T>G, 3335T>C, 3340C>G, 3343G>A, 3346T>A, 3355T>C, 3361T>A, 3364T>G, 3367A>G, 3370T>C, 3382G>T, 3385C>T, 3387A>T, 3388A>G, 3391T>C, 3392A>T, 3395T>A, 3398A>C, 3399C>A, 3400T>G, 3403A>C, 3407G>C, 3409T>A
CDS
454103411.2%98668.1%195 (98.5%)124 (62.6%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C), T919S (3065A>T 3067G>T), V921I (3071G>A), F922L (3074T>C 3076T>C), V923I (3077G>A 3079C>T), V940I (3128G>A), N941S (3132A>G), A942E (3135C>A 3136T>G), H945Q (3145C>A), A949V (3156C>T 3157A>C), K979P (3245A>C 3246A>C 3247A>C), H981D (3251C>G 3253T>C), E983K (3257G>A 3259A>G), C985R (3263T>A 3265T>G), K986P (3266A>C 3267A>C 3268A>C), V992L (3284G>T 3286G>A), P995E (3293C>G 3294C>A 3295T>A), F997L (3301T>G), K998R (3303A>G), K1026M (3387A>T 3388A>G), I1028L (3392A>T), L1029M (3395T>A), T1030Q (3398A>C 3399C>A 3400T>G), D1033Q (3407G>C 3409T>A)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C), AGC915AGT (3055C>T), AAT918AAC (3064T>C), ACG919TCT (3065A>T 3067G>T), CCT920CCC (3070T>C), GTT921ATT (3071G>A), TTT922CTC (3074T>C 3076T>C), GTC923ATT (3077G>A 3079C>T), ATT924ATC (3082T>C), AAG927AAA (3091G>A), TCA928TCT (3094A>T), CTG933TTG (3107C>T), GAC936GAT (3118C>T), CTA937CTG (3121A>G), CGT938AGA (3122C>A 3124T>A), GCA939GCC (3127A>C), GTT940ATT (3128G>A), AAT941AGT (3132A>G), GCT942GAG (3135C>A 3136T>G), ACA943ACC (3139A>C), CAC945CAA (3145C>A), GGA948GGG (3154A>G), GCA949GTC (3156C>T 3157A>C), TTA950CTA (3158T>C), ATA968.TT (3214A>T), CTA971TTG (3221C>T 3223A>G), GAT973GAC (3229T>C), TGC974TGT (3232C>T), TTT976TTC (3238T>C), AAT977AAC (3241T>C), ATA978ATC (3244A>C), AAA979CCC (3245A>C 3246A>C 3247A>C), CTG980TTA (3248C>T 3250G>A), CAT981GAC (3251C>G 3253T>C), GAA983AAG (3257G>A 3259A>G), GAT984GAC (3262T>C), TGT985AGG (3263T>A 3265T>G), AAA986CCC (3266A>C 3267A>C 3268A>C), AGA987CGA (3269A>C), GCT989GCC (3277T>C), AGT991AGC (3283T>C), GTG992TTA (3284G>T 3286G>A), CCC993CCT (3289C>T), TCC994TCA (3292C>A), CCT995GAA (3293C>G 3294C>A 3295T>A), AAT996AAC (3298T>C), TTT997TTG (3301T>G), AAG998AGG (3303A>G), CAA1002CAG (3316A>G), TTC1004TTT (3322C>T), CAA1005CAG (3325A>G), GTT1008GTG (3334T>G), TTG1009CTG (3335T>C), CCC1010CCG (3340C>G), CAG1011CAA (3343G>A), GGT1012GGA (3346T>A), AAT1015AAC (3355T>C), CCT1017CCA (3361T>A), ACT1018ACG (3364T>G), TTA1019TTG (3367A>G), TGT1020TGC (3370T>C), GTG1024GTT (3382G>T), GAC1025GAT (3385C>T), AAA1026ATG (3387A>T 3388A>G), GCT1027GCC (3391T>C), ATA1028TTA (3392A>T), TTG1029ATG (3395T>A), ACT1030CAG (3398A>C 3399C>A 3400T>G), GTA1031GTC (3403A>C), GAT1033CAA (3407G>C 3409T>A)
45454210.3%32150.4%88 (96.7%)41 (45.1%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C)
45454215.0%32150.4%88 (96.7%)41 (45.1%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C)
Proteins
454103411.2%98668.1%195 (98.5%)124 (62.6%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C), T919S (3065A>T 3067G>T), V921I (3071G>A), F922L (3074T>C 3076T>C), V923I (3077G>A 3079C>T), V940I (3128G>A), N941S (3132A>G), A942E (3135C>A 3136T>G), H945Q (3145C>A), A949V (3156C>T 3157A>C), K979P (3245A>C 3246A>C 3247A>C), H981D (3251C>G 3253T>C), E983K (3257G>A 3259A>G), C985R (3263T>A 3265T>G), K986P (3266A>C 3267A>C 3268A>C), V992L (3284G>T 3286G>A), P995E (3293C>G 3294C>A 3295T>A), F997L (3301T>G), K998R (3303A>G), K1026M (3387A>T 3388A>G), I1028L (3392A>T), L1029M (3395T>A), T1030Q (3398A>C 3399C>A 3400T>G), D1033Q (3407G>C 3409T>A)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C), AGC915AGT (3055C>T), AAT918AAC (3064T>C), ACG919TCT (3065A>T 3067G>T), CCT920CCC (3070T>C), GTT921ATT (3071G>A), TTT922CTC (3074T>C 3076T>C), GTC923ATT (3077G>A 3079C>T), ATT924ATC (3082T>C), AAG927AAA (3091G>A), TCA928TCT (3094A>T), CTG933TTG (3107C>T), GAC936GAT (3118C>T), CTA937CTG (3121A>G), CGT938AGA (3122C>A 3124T>A), GCA939GCC (3127A>C), GTT940ATT (3128G>A), AAT941AGT (3132A>G), GCT942GAG (3135C>A 3136T>G), ACA943ACC (3139A>C), CAC945CAA (3145C>A), GGA948GGG (3154A>G), GCA949GTC (3156C>T 3157A>C), TTA950CTA (3158T>C), ATA968.TT (3214A>T), CTA971TTG (3221C>T 3223A>G), GAT973GAC (3229T>C), TGC974TGT (3232C>T), TTT976TTC (3238T>C), AAT977AAC (3241T>C), ATA978ATC (3244A>C), AAA979CCC (3245A>C 3246A>C 3247A>C), CTG980TTA (3248C>T 3250G>A), CAT981GAC (3251C>G 3253T>C), GAA983AAG (3257G>A 3259A>G), GAT984GAC (3262T>C), TGT985AGG (3263T>A 3265T>G), AAA986CCC (3266A>C 3267A>C 3268A>C), AGA987CGA (3269A>C), GCT989GCC (3277T>C), AGT991AGC (3283T>C), GTG992TTA (3284G>T 3286G>A), CCC993CCT (3289C>T), TCC994TCA (3292C>A), CCT995GAA (3293C>G 3294C>A 3295T>A), AAT996AAC (3298T>C), TTT997TTG (3301T>G), AAG998AGG (3303A>G), CAA1002CAG (3316A>G), TTC1004TTT (3322C>T), CAA1005CAG (3325A>G), GTT1008GTG (3334T>G), TTG1009CTG (3335T>C), CCC1010CCG (3340C>G), CAG1011CAA (3343G>A), GGT1012GGA (3346T>A), AAT1015AAC (3355T>C), CCT1017CCA (3361T>A), ACT1018ACG (3364T>G), TTA1019TTG (3367A>G), TGT1020TGC (3370T>C), GTG1024GTT (3382G>T), GAC1025GAT (3385C>T), AAA1026ATG (3387A>T 3388A>G), GCT1027GCC (3391T>C), ATA1028TTA (3392A>T), TTG1029ATG (3395T>A), ACT1030CAG (3398A>C 3399C>A 3400T>G), GTA1031GTC (3403A>C), GAT1033CAA (3407G>C 3409T>A)
17029010.6%66582.0%107 (100%)83 (77.6%)0/0/0/00
Protein mutations:T175S (3065A>T 3067G>T), V177I (3071G>A), F178L (3074T>C 3076T>C), V179I (3077G>A 3079C>T), V196I (3128G>A), N197S (3132A>G), A198E (3135C>A 3136T>G), H201Q (3145C>A), A205V (3156C>T 3157A>C), K235P (3245A>C 3246A>C 3247A>C), H237D (3251C>G 3253T>C), E239K (3257G>A 3259A>G), C241R (3263T>A 3265T>G), K242P (3266A>C 3267A>C 3268A>C), V248L (3284G>T 3286G>A), P251E (3293C>G 3294C>A 3295T>A), F253L (3301T>G), K254R (3303A>G), K282M (3387A>T 3388A>G), I284L (3392A>T), L285M (3395T>A), T286Q (3398A>C 3399C>A 3400T>G), D289Q (3407G>C 3409T>A)
Codon mutations:AGC171AGT (3055C>T), AAT174AAC (3064T>C), ACG175TCT (3065A>T 3067G>T), CCT176CCC (3070T>C), GTT177ATT (3071G>A), TTT178CTC (3074T>C 3076T>C), GTC179ATT (3077G>A 3079C>T), ATT180ATC (3082T>C), AAG183AAA (3091G>A), TCA184TCT (3094A>T), CTG189TTG (3107C>T), GAC192GAT (3118C>T), CTA193CTG (3121A>G), CGT194AGA (3122C>A 3124T>A), GCA195GCC (3127A>C), GTT196ATT (3128G>A), AAT197AGT (3132A>G), GCT198GAG (3135C>A 3136T>G), ACA199ACC (3139A>C), CAC201CAA (3145C>A), GGA204GGG (3154A>G), GCA205GTC (3156C>T 3157A>C), TTA206CTA (3158T>C), ATA224.TT (3214A>T), CTA227TTG (3221C>T 3223A>G), GAT229GAC (3229T>C), TGC230TGT (3232C>T), TTT232TTC (3238T>C), AAT233AAC (3241T>C), ATA234ATC (3244A>C), AAA235CCC (3245A>C 3246A>C 3247A>C), CTG236TTA (3248C>T 3250G>A), CAT237GAC (3251C>G 3253T>C), GAA239AAG (3257G>A 3259A>G), GAT240GAC (3262T>C), TGT241AGG (3263T>A 3265T>G), AAA242CCC (3266A>C 3267A>C 3268A>C), AGA243CGA (3269A>C), GCT245GCC (3277T>C), AGT247AGC (3283T>C), GTG248TTA (3284G>T 3286G>A), CCC249CCT (3289C>T), TCC250TCA (3292C>A), CCT251GAA (3293C>G 3294C>A 3295T>A), AAT252AAC (3298T>C), TTT253TTG (3301T>G), AAG254AGG (3303A>G), CAA258CAG (3316A>G), TTC260TTT (3322C>T), CAA261CAG (3325A>G), GTT264GTG (3334T>G), TTG265CTG (3335T>C), CCC266CCG (3340C>G), CAG267CAA (3343G>A), GGT268GGA (3346T>A), AAT271AAC (3355T>C), CCT273CCA (3361T>A), ACT274ACG (3364T>G), TTA275TTG (3367A>G), TGT276TGC (3370T>C), GTG280GTT (3382G>T), GAC281GAT (3385C>T), AAA282ATG (3387A>T 3388A>G), GCT283GCC (3391T>C), ATA284TTA (3392A>T), TTG285ATG (3395T>A), ACT286CAG (3398A>C 3399C>A 3400T>G), GTA287GTC (3403A>C), GAT289CAA (3407G>C 3409T>A)
45454210.3%32150.4%88 (96.7%)41 (45.1%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C)
14618.5%12538.1%45 (93.8%)16 (33.3%)2/1/0/00
Protein mutations:M4L (1810A>T 1812G>A), R5K (1814G>A), Q7E (1819C>G), K8S (1823A>G 1824G>C), Y9del (1825_1827delTAT), S10P (1828T>C), T11L (1831A>C 1832C>T 1833C>T), F12Y (1835T>A), V13C (1837G>T 1838T>G 1839A>T), K14M (1841A>T), Y17M (1849T>A 1850A>T 1851T>G), G18T (1852G>A 1853G>C), G19K (1855G>A 1856G>A), G19_G20insK (1857_1858insAAA), K21N (1863A>T), G22R (1864G>A), G23A (1868G>C), Q24V (1870C>G 1871A>T 1872A>G), G25R (1873G>A), A26V (1877C>T), E27D (1881A>T), P29E (1885C>G 1886C>A), P29_V30insN (1887_1888insAAT), V30A (1889T>C 1890T>C), K36Q (1906A>C 1908G>A), T37Q (1909A>C 1910C>A 1911A>G), I40F (1918A>T 1920C>T), R41S (1923A>T), K42R (1925A>G), D43Q (1927G>C 1929C>A), K45P (1933A>C 1934A>C 1935G>C)
Codon mutations:GCA2GCC (1806A>C), ATG4TTA (1810A>T 1812G>A), AGA5AAA (1814G>A), GGA6GGG (1818A>G), CAA7GAA (1819C>G), AAG8AGC (1823A>G 1824G>C), TAT9del (1825_1827delTAT), TCT10CCT (1828T>C), ACC11CTT (1831A>C 1832C>T 1833C>T), TTT12TAT (1835T>A), GTA13TGT (1837G>T 1838T>G 1839A>T), AAG14ATG (1841A>T), ACA16ACT (1848A>T), TAT17ATG (1849T>A 1850A>T 1851T>G), GGT18ACT (1852G>A 1853G>C), GGG19AAG (1855G>A 1856G>A), GGG19_GGA20insAAA (1857_1858insAAA), AAA21AAT (1863A>T), GGA22AGA (1864G>A), GGT23GCT (1868G>C), CAA24GTG (1870C>G 1871A>T 1872A>G), GGA25AGA (1873G>A), GCA26GTA (1877C>T), GAA27GAT (1881A>T), GGG28GGT (1884G>T), CCA29GAA (1885C>G 1886C>A), CCA29_GTT30insAAT (1887_1888insAAT), GTT30GCC (1889T>C 1890T>C), TGT31TGC (1893T>C), TCC33TCT (1899C>T), GGT35GGA (1905T>A), AAG36CAA (1906A>C 1908G>A), ACA37CAG (1909A>C 1910C>A 1911A>G), ATC40TTT (1918A>T 1920C>T), AGA41AGT (1923A>T), AAA42AGA (1925A>G), GAC43CAA (1927G>C 1929C>A), TGT44TGC (1932T>C), AAG45CCC (1933A>C 1934A>C 1935G>C)
45454215.0%32150.4%88 (96.7%)41 (45.1%)2/1/0/00
Protein mutations:W456F (1679G>T 1680G>T), S461A (1693T>G 1695A>T), L462P (1696T>C 1697T>C 1698G>T), D465T (1705G>A 1706A>C 1707T>A), I467L (1711A>T 1713C>G), T473F (1729A>T 1730C>T 1731A>T), T475S (1735A>T 1737T>A), I476L (1738A>C), Q477T (1741C>A 1742A>C 1743G>A), R481K (1753C>A 1754G>A 1755T>A), A482Q (1756G>C 1757C>A 1758T>A), L484A (1762C>G 1763T>C 1764G>T), A486F (1768G>T 1769C>T), S487T (1771T>A 1773T>G), V490F (1780G>T 1782T>C), V491M (1783G>A 1785T>G), M494V (1792A>G 1794G>T), Y496M (1798T>A 1799A>T 1800T>G), M500L (1810A>T 1812G>A), R501K (1814G>A), Q503E (1819C>G), K504S (1823A>G 1824G>C), Y505del (1825_1827delTAT), S506P (1828T>C), T507L (1831A>C 1832C>T 1833C>T), F508Y (1835T>A), V509C (1837G>T 1838T>G 1839A>T), K510M (1841A>T), Y513M (1849T>A 1850A>T 1851T>G), G514T (1852G>A 1853G>C), G515K (1855G>A 1856G>A), G515_G516insK (1857_1858insAAA), K517N (1863A>T), G518R (1864G>A), G519A (1868G>C), Q520V (1870C>G 1871A>T 1872A>G), G521R (1873G>A), A522V (1877C>T), E523D (1881A>T), P525E (1885C>G 1886C>A), P525_V526insN (1887_1888insAAT), V526A (1889T>C 1890T>C), K532Q (1906A>C 1908G>A), T533Q (1909A>C 1910C>A 1911A>G), I536F (1918A>T 1920C>T), R537S (1923A>T), K538R (1925A>G), D539Q (1927G>C 1929C>A), K541P (1933A>C 1934A>C 1935G>C)
Codon mutations:TTG454TTA (1674G>A), GCG455GCC (1677G>C), TGG456TTT (1679G>T 1680G>T), GCA459GCT (1689A>T), TCA461GCT (1693T>G 1695A>T), TTG462CCT (1696T>C 1697T>C 1698G>T), TGT463TGC (1701T>C), CAG464CAA (1704G>A), GAT465ACA (1705G>A 1706A>C 1707T>A), CTC466CTG (1710C>G), ATC467TTG (1711A>T 1713C>G), CGC468CGA (1716C>A), ATA470ATT (1722A>T), CGT471CGA (1725T>A), AAA472AAG (1728A>G), ACA473TTT (1729A>T 1730C>T 1731A>T), GGA474GGG (1734A>G), ACT475TCA (1735A>T 1737T>A), ATA476CTA (1738A>C), CAG477ACA (1741C>A 1742A>C 1743G>A), GAT478GAC (1746T>C), TAT479TAC (1749T>C), CGT481AAA (1753C>A 1754G>A 1755T>A), GCT482CAA (1756G>C 1757C>A 1758T>A), CTG484GCT (1762C>G 1763T>C 1764G>T), GCT486TTT (1768G>T 1769C>T), TCT487ACG (1771T>A 1773T>G), CCC488CCA (1776C>A), GCA489GCC (1779A>C), GTT490TTC (1780G>T 1782T>C), GTT491ATG (1783G>A 1785T>G), CAG492CAA (1788G>A), GGT493GGA (1791T>A), ATG494GTT (1792A>G 1794G>T), GCA495GCC (1797A>C), TAT496ATG (1798T>A 1799A>T 1800T>G), GCA498GCC (1806A>C), ATG500TTA (1810A>T 1812G>A), AGA501AAA (1814G>A), GGA502GGG (1818A>G), CAA503GAA (1819C>G), AAG504AGC (1823A>G 1824G>C), TAT505del (1825_1827delTAT), TCT506CCT (1828T>C), ACC507CTT (1831A>C 1832C>T 1833C>T), TTT508TAT (1835T>A), GTA509TGT (1837G>T 1838T>G 1839A>T), AAG510ATG (1841A>T), ACA512ACT (1848A>T), TAT513ATG (1849T>A 1850A>T 1851T>G), GGT514ACT (1852G>A 1853G>C), GGG515AAG (1855G>A 1856G>A), GGG515_GGA516insAAA (1857_1858insAAA), AAA517AAT (1863A>T), GGA518AGA (1864G>A), GGT519GCT (1868G>C), CAA520GTG (1870C>G 1871A>T 1872A>G), GGA521AGA (1873G>A), GCA522GTA (1877C>T), GAA523GAT (1881A>T), GGG524GGT (1884G>T), CCA525GAA (1885C>G 1886C>A), CCA525_GTT526insAAT (1887_1888insAAT), GTT526GCC (1889T>C 1890T>C), TGT527TGC (1893T>C), TCC529TCT (1899C>T), GGT531GGA (1905T>A), AAG532CAA (1906A>C 1908G>A), ACA533CAG (1909A>C 1910C>A 1911A>G), ATC536TTT (1918A>T 1920C>T), AGA537AGT (1923A>T), AAA538AGA (1925A>G), GAC539CAA (1927G>C 1929C>A), TGT540TGC (1932T>C), AAG541CCC (1933A>C 1934A>C 1935G>C)
20224417.6%19663.4%43 (100%)25 (58.1%)0/0/0/00
Protein mutations:W204F (1679G>T 1680G>T), S209A (1693T>G 1695A>T), L210P (1696T>C 1697T>C 1698G>T), D213T (1705G>A 1706A>C 1707T>A), I215L (1711A>T 1713C>G), T221F (1729A>T 1730C>T 1731A>T), T223S (1735A>T 1737T>A), I224L (1738A>C), Q225T (1741C>A 1742A>C 1743G>A), R229K (1753C>A 1754G>A 1755T>A), A230Q (1756G>C 1757C>A 1758T>A), L232A (1762C>G 1763T>C 1764G>T), A234F (1768G>T 1769C>T), S235T (1771T>A 1773T>G), V238F (1780G>T 1782T>C), V239M (1783G>A 1785T>G), M242V (1792A>G 1794G>T), Y244M (1798T>A 1799A>T 1800T>G)
Codon mutations:TTG202TTA (1674G>A), GCG203GCC (1677G>C), TGG204TTT (1679G>T 1680G>T), GCA207GCT (1689A>T), TCA209GCT (1693T>G 1695A>T), TTG210CCT (1696T>C 1697T>C 1698G>T), TGT211TGC (1701T>C), CAG212CAA (1704G>A), GAT213ACA (1705G>A 1706A>C 1707T>A), CTC214CTG (1710C>G), ATC215TTG (1711A>T 1713C>G), CGC216CGA (1716C>A), ATA218ATT (1722A>T), CGT219CGA (1725T>A), AAA220AAG (1728A>G), ACA221TTT (1729A>T 1730C>T 1731A>T), GGA222GGG (1734A>G), ACT223TCA (1735A>T 1737T>A), ATA224CTA (1738A>C), CAG225ACA (1741C>A 1742A>C 1743G>A), GAT226GAC (1746T>C), TAT227TAC (1749T>C), CGT229AAA (1753C>A 1754G>A 1755T>A), GCT230CAA (1756G>C 1757C>A 1758T>A), CTG232GCT (1762C>G 1763T>C 1764G>T), GCT234TTT (1768G>T 1769C>T), TCT235ACG (1771T>A 1773T>G), CCC236CCA (1776C>A), GCA237GCC (1779A>C), GTT238TTC (1780G>T 1782T>C), GTT239ATG (1783G>A 1785T>G), CAG240CAA (1788G>A), GGT241GGA (1791T>A), ATG242GTT (1792A>G 1794G>T), GCA243GCC (1797A>C), TAT244ATG (1798T>A 1799A>T 1800T>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43