Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Tefnutvirus siom18
Assembly
136 (1 contig(s))
7.3
9
0.58 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
156.0 (NT) + 269.0 (AA) = 425.0
76.7148
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 153164 | 153299 | 0.1% | 156 | 57.4% | 136 (100%) | 107 (78.7%) | 0/0 | |
| Mutations: | 153166A>C, 153172A>G, 153174C>A, 153175A>G, 153177T>C, 153183T>A, 153189C>G, 153192T>C, 153195T>A, 153201T>C, 153204C>T, 153207T>C, 153210T>C, 153213A>T, 153219A>G, 153225C>T, 153226A>C, 153228G>C, 153231G>A, 153232T>G, 153234A>G, 153255G>T, 153261T>C, 153264G>C, 153273C>T, 153276T>C, 153279G>A, 153289C>A, 153294T>C | ||||||||