Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Likavirus nanodon

Assembly

110 (1 contig(s))
4.8
6
0.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Likavirus nanodon (Taxonomy ID: 2956119)
80.9091
89.1892
0
75

Alignment

136.0 (NT) + 228.0 (AA) = 364.0
78.7879
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT39040391490.2%13661.8%110 (100%)89 (80.9%)0/0
Mutations:39049G>A, 39050G>A, 39053C>G, 39056C>G, 39059G>C, 39061G>A, 39062G>A, 39065G>C, 39067C>A, 39074A>C, 39080C>G, 39083C>G, 39086A>G, 39089G>A, 39104G>C, 39107G>A, 39110C>G, 39113G>C, 39115C>A, 39119G>C, 39122T>C
CDS
7607963.2%22887.4%37 (100%)33 (89.2%)0/0/0/00
Protein mutations:A771S (39113G>C 39115C>A), A787S (39065G>C 39067C>A), R789W (39059G>C 39061G>A)
Codon mutations:GTA768GTG (39122T>C), CCC769CCG (39119G>C), GCC771TCG (39113G>C 39115C>A), GGG772GGC (39110C>G), TAC773TAT (39107G>A), GCC774GCG (39104G>C), CAC779CAT (39089G>A), TCT780TCC (39086A>G), GCG781GCC (39083C>G), GCG782GCC (39080C>G), GGT784GGG (39074A>C), GCC787TCG (39065G>C 39067C>A), TAC788TAT (39062G>A), CGC789TGG (39059G>C 39061G>A), ACG790ACC (39056C>G), GCG791GCC (39053C>G), TAC792TAT (39050G>A), CTG793TTG (39049G>A)
Proteins
7607963.2%22887.4%37 (100%)33 (89.2%)0/0/0/00
Protein mutations:A771S (39113G>C 39115C>A), A787S (39065G>C 39067C>A), R789W (39059G>C 39061G>A)
Codon mutations:GTA768GTG (39122T>C), CCC769CCG (39119G>C), GCC771TCG (39113G>C 39115C>A), GGG772GGC (39110C>G), TAC773TAT (39107G>A), GCC774GCG (39104G>C), CAC779CAT (39089G>A), TCT780TCC (39086A>G), GCG781GCC (39083C>G), GCG782GCC (39080C>G), GGT784GGG (39074A>C), GCC787TCG (39065G>C 39067C>A), TAC788TAT (39062G>A), CGC789TGG (39059G>C 39061G>A), ACG790ACC (39056C>G), GCG791GCC (39053C>G), TAC792TAT (39050G>A), CTG793TTG (39049G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43