NGS Details (SRR3458562_Metagenome_example): Shamshuipovirus mEpX2

Assembly

136 (1 contig(s))
4.4
6
0.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Shamshuipovirus mEpX2 (Taxonomy ID: 2169928)
96.3235
97.7778
0
67

Alignment

252.0 (NT) + 311.0 (AA) = 563.0
94.941
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT35638357730.4%25292.6%136 (100%)131 (96.3%)0/0
Mutations:35659C>T, 35686A>G, 35704C>A, 35707A>G, 35726G>A
CDS
368028.3%31195.4%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:G65R (35726G>A)
Codon mutations:TTC42TTT (35659C>T), AAA51AAG (35686A>G), CCC57CCA (35704C>A), AAA58AAG (35707A>G), GGA65AGA (35726G>A)
Proteins
368028.3%31195.4%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:G65R (35726G>A)
Codon mutations:TTC42TTT (35659C>T), AAA51AAG (35686A>G), CCC57CCA (35704C>A), AAA58AAG (35707A>G), GGA65AGA (35726G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43