Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Stx2-converting phage 1717

Assembly

2450 (5 contig(s))
13.7
347
22.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Stx2-converting phage 1717 (Taxonomy ID: 563769)
98.0816
98.994
2
77

Alignment

4712.0 (NT) + 3316.0 (AA) = 8028.0
97.593
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2621463.9%471296.2%2450 (100%)2403 (98.1%)0/0
Mutations:103T>C, 274G>A, 379G>A, 457T>C, 484A>T, 594C>T, 598G>A, 646G>T, 670G>C, 672G>A, 673G>A, 681G>A, 13278T>C, 13389A>T, 13410G>A, 13416T>C, 13484T>G, 13541G>T, 13601T>C, 13604C>G, 13634T>C, 13709T>C, 13853G>A, 13859T>C, 13919T>C, 13967A>C, 13994G>A, 14000C>T, 14003T>C, 14024A>G, 14039T>A, 14045C>T, 14961A>G, 14984C>A, 49826A>T, 49832A>C, 49852G>A, 49853C>A, 49868C>T, 61673T>A, 61799G>A, 61922T>C, 61925C>G, 62060A>T, 62063A>G, 62127C>T, 62142A>G
CDS
20727424.8%48498.4%68 (100%)68 (100%)0/0/0/01
120644.9%131199.7%206 (100%)205 (99.5%)0/0/0/00
15843.3%39199.0%58 (100%)57 (98.3%)0/0/0/00
Protein mutations:T13N (14984C>A)
Codon mutations:GTA5GTG (14961A>G), ACT13AAT (14984C>A)
19924013.6%26292.3%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:L202F (49832A>C), S209K (49852G>A 49853C>A)
Codon mutations:GGA200GGT (49826A>T), TTA202TTC (49832A>C), AGC209AAA (49852G>A 49853C>A), TCC214TCT (49868C>T)
26939131.5%86899.1%123 (100%)123 (100%)0/0/0/01
Proteins
20727424.8%48498.4%68 (100%)68 (100%)0/0/0/01
Protein mutations:none
Codon mutations:ATT211ATC (13278T>C), GCA248GCT (13389A>T), AGG255AGA (13410G>A), GAT257GAC (13416T>C)
120644.9%131199.7%206 (100%)205 (99.5%)0/0/0/00
Protein mutations:none
Codon mutations:GCT7GCG (13484T>G), CTG26CTT (13541G>T), ATT46ATC (13601T>C), CGC47CGG (13604C>G), GAT57GAC (13634T>C), AGT82AGC (13709T>C), AAG130AAA (13853G>A), CTT132CTC (13859T>C), ACT152ACC (13919T>C), TCA168TCC (13967A>C), GAG177GAA (13994G>A), GAC179GAT (14000C>T), GCT180GCC (14003T>C), GCA187GCG (14024A>G), ATT192ATA (14039T>A), GCC194GCT (14045C>T)
15843.3%39199.0%58 (100%)57 (98.3%)0/0/0/00
Protein mutations:T13N (14984C>A)
Codon mutations:GTA5GTG (14961A>G), ACT13AAT (14984C>A)
19924013.6%26292.3%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:L202F (49832A>C), S209K (49852G>A 49853C>A)
Codon mutations:GGA200GGT (49826A>T), TTA202TTC (49832A>C), AGC209AAA (49852G>A 49853C>A), TCC214TCT (49868C>T)
26939131.5%86899.1%123 (100%)123 (100%)0/0/0/01
Protein mutations:none
Codon mutations:GGT297GGA (61673T>A), GAG339GAA (61799G>A), TCT380TCC (61922T>C), CGC381CGG (61925C>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43