NGS Details (SRR3458562_Metagenome_example): Salmonella phage vB_SemP_Emek

Assembly

136 (1 contig(s))
5.2
6
0.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage vB_SemP_Emek (Taxonomy ID: 1168548)
94.1176
97.619
1
70

Alignment

240.0 (NT) + 280.0 (AA) = 520.0
93.8628
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT10586107210.3%24088.2%136 (100%)128 (94.1%)0/0
Mutations:10588T>G, 10591C>T, 10595A>G, 10639T>C, 10663T>C, 10666A>G, 10667C>T, 10679T>G
CDS
20123013.0%18798.9%30 (100%)29 (96.7%)0/0/0/01
Protein mutations:I204V (10595A>G)
Codon mutations:GGT201GGG (10588T>G), GGC202GGT (10591C>T), ATA204GTA (10595A>G), ATT218ATC (10639T>C), GGT226GGC (10663T>C), TCA227TCG (10666A>G), CTG228TTG (10667C>T)
1122.6%93100%12 (100%)12 (100%)0/0/0/00
Proteins
20123013.0%18798.9%30 (100%)29 (96.7%)0/0/0/01
Protein mutations:I204V (10595A>G)
Codon mutations:GGT201GGG (10588T>G), GGC202GGT (10591C>T), ATA204GTA (10595A>G), ATT218ATC (10639T>C), GGT226GGC (10663T>C), TCA227TCG (10666A>G), CTG228TTG (10667C>T)
1122.6%93100%12 (100%)12 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43