Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Unahavirus uv6H

Assembly

93 (1 contig(s))
3.3
4
0.26 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Unahavirus uv6H (Taxonomy ID: 2560472)
87.0968
87.0968
0
63

Alignment

138.0 (NT) + 203.0 (AA) = 341.0
84.4059
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT39904399960.2%13874.2%93 (100%)81 (87.1%)0/0
Mutations:39908T>A, 39917A>T, 39925C>A, 39941T>A, 39943A>G, 39946G>A, 39953A>G, 39959G>T, 39962G>A, 39980T>A, 39985C>A, 39992T>A
CDS
10413422.8%20387.5%31 (100%)27 (87.1%)0/0/0/00
Protein mutations:V107L (39985C>A), A127S (39925C>A), F129L (39917A>T)
Codon mutations:GTA104GTT (39992T>A), GTA107TTA (39985C>A), ATA108ATT (39980T>A), CAC114CAT (39962G>A), CGC115CGA (39959G>T), AGT117AGC (39953A>G), CTG120TTG (39946G>A), TTA121CTT (39941T>A 39943A>G), GCA127TCA (39925C>A), TTT129TTA (39917A>T), ACA132ACT (39908T>A)
Proteins
10413422.8%20387.5%31 (100%)27 (87.1%)0/0/0/00
Protein mutations:V107L (39985C>A), A127S (39925C>A), F129L (39917A>T)
Codon mutations:GTA104GTT (39992T>A), GTA107TTA (39985C>A), ATA108ATT (39980T>A), CAC114CAT (39962G>A), CGC115CGA (39959G>T), AGT117AGC (39953A>G), CTG120TTG (39946G>A), TTA121CTT (39941T>A 39943A>G), GCA127TCA (39925C>A), TTT129TTA (39917A>T), ACA132ACT (39908T>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43